Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00645 ATGTACGGAATGTGCTCACAAGAACTTTCCAACCTCCATGATTCTGATCCTTGGACGACCACGTCGTTTCAAGATGTTTCTCCATGCTTCCGGAACGTTTTCTTAACGGAGAGCTGGAGCACTGAGCTGCCTTTAAAAGAAAACGACGCCGAAGATATGGTTATCTACAGTATATTAAGTGAGGCTGCCAGCACTGGATGGCTTCCCGCAAGCGATGATTTTACCaacaagataaaaagtaagtgcatgaatgaagaagaaaacgaTCTTAACACGGCGGCGAGTGGGAGTCACGCTCCGAGAGATGAGAGGCGTTACAAAGGCGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCGGAGATTAGGGATCCAAAGAAGAATGGCGTTAGGGTGTGGCTTGGGACTTACGAGACGGGGGAAGATGCGGCTTTGGCTTATGACCAAGCCGCGTTCGAGATGCGTGGCTCCAAAGCTAAGCTGAATTTCCCTCACTTGATTGGCTCAAGTCACGCTGGGCCTGTTAGAGCCTCTATAAAGCGGCGGTCGTCGGAGCTGGGCTTCTCTGACTTGTCATATTCGTTCGGAAATGCAACGGGAAGCGAAGCAATAATAGCACCACCGTGCTGGAATCCAGTTCCATGGAGATGGGTTGCGCAAATGCATGGCAATTTTCattg 677 0.483 MYGMCSQELSNLHDSDPWTTTSFQDVSPCFRNVFLTESWSTELPLKENDAEDMVIYSILSEAASTGWLPASDDFTNKIKSKCMNEEENDLNTAASGSHAPRDERRYKGVRRRPWGKYAAEIRDPKKNGVRVWLGTYETGEDAALAYDQAAFEMRGSKAKLNFPHLIGSSHAGPVRASIKRRSSELGFSDLSYSFGNATGSEAIIAPPCWNPVPWRWVAQMHGNFH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00645 225 CDD AP2 105 165 IPR001471 GO:0003700|GO:0006355
Bva01g00645 225 ProSiteProfiles AP2/ERF domain profile. 105 163 IPR001471 GO:0003700|GO:0006355
Bva01g00645 225 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Bva01g00645 225 PRINTS Ethylene responsive element binding protein signature 145 165 IPR001471 GO:0003700|GO:0006355
Bva01g00645 225 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700|GO:0006355
Bva01g00645 225 PANTHER BNAA04G25900D PROTEIN 22 192 - -
Bva01g00645 225 SMART rav1_2 105 169 IPR001471 GO:0003700|GO:0006355
Bva01g00645 225 SUPERFAMILY DNA-binding domain 105 164 IPR016177 GO:0003677
Bva01g00645 225 Pfam AP2 domain 105 155 IPR001471 GO:0003700|GO:0006355
Bva01g00645 225 PANTHER DNA-BINDING DOMAIN 22 192 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00645 Bva-Chr1 4750467 4751144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00645 27 189 AP2-EREBP Transcription Factor Family AT2G44840 59.146 1.96e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva01g00645 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00645 K09286 - gmx:100793366 199.519