Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00608 ATGCCTCCAAGAACGGTGAAGAGAGGGGCTACTGCAGGTGGGGGAAAGAGGGGGGGCAGAGGCACTAGGGGGACCGCTAATAAGGCTTCCCAGAACCAGCAGCAGGCTGAAGCAGCAGTGGAGGTCGAGAAGCATGAAGAAAAGCCGGTTCCTGAGGATGAGGTCAAAGTCGAAGAGAAGCCAGTTGTTGAAGAGAAACCTGTCGTTGAGGAAAAGCCTGTTTATGAGGAGAAGTCCATTGATATAAACCAAATGGCTACGGagcatgaagatgaagaaaatccTGAAACTAATGGGGCAGCTGTGGTGAAAAACGATGAAGAGGAGGTTAAGGAGTTGGTCgatgaatatgaaaaagatGAACGCTTAGAATTGGAGGATAATGACCATGAGTATGAACCTGAGGAGTATGGTGCAGTTGATTATGATGAGAAGGAAATTGAACAAGATGACGTTCAGGAGGTGGGAGATGAGGGAGAAGAAGCTGAGGAAAATGTAGGAGAAGGTGATATGGGTGAGGAGGAAGTGGAAGTACATGAGGAACTTGAGGGAGAAGATGATGAGCATGCAAGTGAGGAGCATGACCATGCAGAAGTTGATGTAGATGAAGACGAACACCATGAGGTTGTAAAGGAGAGGCGCAAGCACAAGGAGTTTGAAGTATTTGTTGGGGGCTTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGCTTTTAGAACAGTTGGTGAGGTTACTGAAGTAAGGCTGATGATGAACCCTCAGACTAAAAAGAACAAGGGCTTTGCATTTTTGCGTTTTGCAACTGTGGAGCAAGCTAGACGAGCTGTAACAGATTTAAGGAGCCCAGTGATTAATGGCAAAAAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTTTTTGGGTAATATATGCAAGACATGGACAAAGGAGGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTGAGGCTGTTGAGGATTTGACTCTAGTAGAAGATAGTAACAATGAGGGAATGAACCGTGGATTTgcttttttggaattttcatCTCGCTCAGATGCTATGGATTCCTTTAAACGACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATCATGGCGCAGGTTAAAACTGTGTTTATTGATGGTCTGCCACCTTCATGGGATGAGGACCGTGTTCGTGAACTTCTTAGGAAGTATGGGAATGTTGAAAAGATTGAACTTGCAAGAAACATGCCTTCTGCCAAAAGGAAGGACTTTGGATTTGTTACCTTTGACAGTCATGATGCTGCTGTGACTTGTGCGAAAAGCATTAATAATGCAGAGTTGGGTGAAGGAGACATCAAGGCTAAAGTTAGAGCTAGACTTTCAAGACCACTTCAAAGAGGCCGTGGGAAACATGCTAGTCGAGGGGACTACCGTACTAGCCGAAGCTCTGGAAGAGTTTCTACAAGGCCTTCATGGGGTCGACCTGCACCACGCAGTCTCCCTACCGTGGGATG 1559 0.4432 MPPRTVKRGATAGGGKRGGRGTRGTANKASQNQQQAEAAVEVEKHEEKPVPEDEVKVEEKPVVEEKPVVEEKPVYEEKSIDINQMATEHEDEENPETNGAAVVKNDEEEVKELVDEYEKDERLELEDNDHEYEPEEYGAVDYDEKEIEQDDVQEVGDEGEEAEENVGEGDMGEEEVEVHEELEGEDDEHASEEHDHAEVDVDEDEHHEVVKERRKHKEFEVFVGGLDKDATEDDLRKAFRTVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARRAVTDLRSPVINGKKCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVEAVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDSFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRELLRKYGNVEKIELARNMPSAKRKDFGFVTFDSHDAAVTCAKSINNAELGEGDIKAKVRARLSRPLQRGRGKHASRGDYRTSRSSGRVSTRPSWGRPAPRSLPTVG 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00608 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Bva01g00608 519 SUPERFAMILY RNA-binding domain, RBD 297 468 IPR035979 GO:0003676
Bva01g00608 519 MobiDBLite consensus disorder prediction 24 38 - -
Bva01g00608 519 SUPERFAMILY RNA-binding domain, RBD 216 297 IPR035979 GO:0003676
Bva01g00608 519 Coils Coil 26 48 - -
Bva01g00608 519 MobiDBLite consensus disorder prediction 473 519 - -
Bva01g00608 519 MobiDBLite consensus disorder prediction 39 63 - -
Bva01g00608 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 383 IPR000504 GO:0003723
Bva01g00608 519 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 490 - -
Bva01g00608 519 Gene3D - 299 382 IPR012677 -
Bva01g00608 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 396 478 IPR000504 GO:0003723
Bva01g00608 519 CDD RRM_SF 301 368 - -
Bva01g00608 519 Coils Coil 145 165 - -
Bva01g00608 519 CDD RRM_SF 221 292 - -
Bva01g00608 519 MobiDBLite consensus disorder prediction 189 205 - -
Bva01g00608 519 Gene3D - 386 504 IPR012677 -
Bva01g00608 519 MobiDBLite consensus disorder prediction 86 126 - -
Bva01g00608 519 SMART rrm1_1 397 470 IPR000504 GO:0003723
Bva01g00608 519 SMART rrm1_1 220 293 IPR000504 GO:0003723
Bva01g00608 519 SMART rrm1_1 300 379 IPR000504 GO:0003723
Bva01g00608 519 MobiDBLite consensus disorder prediction 86 205 - -
Bva01g00608 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Bva01g00608 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 398 464 IPR000504 GO:0003723
Bva01g00608 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 366 IPR000504 GO:0003723
Bva01g00608 519 Coils Coil 100 123 - -
Bva01g00608 519 PANTHER OSJNBB0038F03.1 PROTEIN 1 490 - -
Bva01g00608 519 CDD RRM_SF 398 470 - -
Bva01g00608 519 MobiDBLite consensus disorder prediction 1 63 - -
Bva01g00608 519 Gene3D - 160 294 IPR012677 -
Bva01g00608 519 MobiDBLite consensus disorder prediction 127 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00608 Bva-Chr1 4513531 4516564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00608 220 458 Eukaryotic Initiation Factors Gene Family AT1G49760 23.413 2.02e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00608 - - gmx:100779340 615.535