Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00570 ATGGAACGCGAGATGGAACTGGACGACAAAACCGTCGCCGACCTTGACAGTTCACTTGCCGGAGATGGTGGCGGAGGTGATGGCGGCAGTGGGGATGAGGGATTGGCGGGGTTCGGTGACGGTGGTGGAAGTAGCTCTCAGGGAGGCCGAGACAGAGTAAAGGGGCCCTGGTCGCCGGAGGAGGACGCGATTCTTAGTCGACTTGTAAGCAAGTTCGGTGCCAGAAATTGGAGCTTAATTGCTCGAGGGATCGCCGGAAGATCCGGAAAATCATGCCGGCTCCGGTGGTGCAATCAACTCGATCCAGCTGTTAAGCGCAAGCCTTTTACTGATGAGGAGGACCGGATCATAGTTGCTGCACATGCAATCCACGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGACAATGCCATTAAGAACCACTGGAATTCCACTTTGAGGCGTCGGGGAGTGGATCATGACAAGGTTAAGTTAGAATCTAACAACTTGGCAGAAGATTTTAGCTTGGACAAAATTAAAGCATCATCCGAAGAGACTCTTTCATGTGGGGATGTTAATTCCTTGAGATCCTTTGACGGAAGAGATGTCAGTTCAATGGAGAATGTGGATGATAaatgtgaagaaaaattacagGTAGAGGGTCAATTAAATCATGAAGtcaaggatcatccaactcTTTTTCGACCGGTAGCACGTTTCAGTGCCTTTAATGTGTACAATAACTCTTCCGGTGGTATATCATCTTTTCCAAGGCATATTCCAATGCAAGGACCTCTTTTCCAAGCATCAAAACCAGATGCCGAAACTTTTAGAATGCTTGACGGGATTCACAGTGACCAGGCAGTGCCTAACCAGTGTGGCCATGGTTGCTGTACTGGTCAAGATGGCAAAAATCGCAAAAGCTCTTTGTTGGGACAggaatttattgaattttcagAACCTCCGTCGTCTTTCCCTAATTTTGAGCTGGCTGCAATAGCCACTGATATTAGCAACCTTGCTTGGCTTAAGAGTGGATTGGAGAATAATAGTGTCAAAATAATGGGTGACGCCACCGGTCGGGTAATATCTCATGGATCTCAAGTGCACATTGGTCATTA 1115 0.4583 MEREMELDDKTVADLDSSLAGDGGGGDGGSGDEGLAGFGDGGGSSSQGGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVDHDKVKLESNNLAEDFSLDKIKASSEETLSCGDVNSLRSFDGRDVSSMENVDDKCEEKLQVEGQLNHEVKDHPTLFRPVARFSAFNVYNNSSGGISSFPRHIPMQGPLFQASKPDAETFRMLDGIHSDQAVPNQCGHGCCTGQDGKNRKSSLLGQEFIEFSEPPSSFPNFELAAIATDISNLAWLKSGLENNSVKIMGDATGRVISHGSQVHIGH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00570 371 Pfam Myb-like DNA-binding domain 57 114 - -
Bva01g00570 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Bva01g00570 371 SMART sant 105 153 IPR001005 -
Bva01g00570 371 SMART sant 53 102 IPR001005 -
Bva01g00570 371 MobiDBLite consensus disorder prediction 1 57 - -
Bva01g00570 371 MobiDBLite consensus disorder prediction 1 15 - -
Bva01g00570 371 Gene3D - 53 105 - -
Bva01g00570 371 CDD SANT 108 151 IPR001005 -
Bva01g00570 371 PANTHER MYB PROTEIN-RELATED 1 348 - -
Bva01g00570 371 SUPERFAMILY Homeodomain-like 51 147 IPR009057 -
Bva01g00570 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 100 IPR017930 -
Bva01g00570 371 Gene3D - 108 154 - -
Bva01g00570 371 ProSiteProfiles Myb-like domain profile. 49 100 IPR001005 -
Bva01g00570 371 PANTHER - 1 348 - -
Bva01g00570 371 CDD SANT 56 98 IPR001005 -
Bva01g00570 371 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00570 Bva-Chr1 4306095 4309071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00570 43 371 MYB Transcription Factor Family AT3G09230 53.982 2.56e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva01g00570 Myb_DNA-bind_6 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00570 K09422 - gmx:100813406 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00570 01 4306095 4309071 Bva01g00570 01 4306095 4309071 ECH