Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00569 ATGTCCAACATAGAACGAGTGGGTCACCGGCGTTCGGTGGCCGGAAGTGACATGAGCGGCGACGGCAGCTTGTGCTTCTCTGATGCTGACGATGGCTCTTGCTATTCTCATTTCTATTCAACAAATGGTGGGTCTTATGACGATTACAGCTTCTCTTGCGTTTCTGATCCTGAGGTTGGGTGTGTTCATGATTCTCGCAGAGCATCTTCGGTTTCTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAATAGAGAGGGATTGTAGAATTTGCCATCTGGGTTTAGAGAGTGACAGTCAAGAGTGTGGGGTTCCAATTGAATTGGGGTGTTCTTGCAAGGATGATTTAGCTGCTGCTCACAAGAACTGTGCTGAAGCCTGGTTTAAGATCAAAGGGAATAGGACCTGTGAAATTTGTCATTCTGTTGCGCGGAATGTCTATAGCACAACCGAGGAGGTAACGGAGAATTCAGGTGACAGCAACAATGCCAATGCAGCAGCATCCTCATTCTCAACGTCTGCTCCTGCATCCTCAACTGAAACTCGAAGGTTTTGGCATGGCCATCGCTTCCTCAACTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTGATATCATGGCTCTTTCACTTTAATGTGTCATCATCCTA 677 0.4623 MSNIERVGHRRSVAGSDMSGDGSLCFSDADDGSCYSHFYSTNGGSYDDYSFSCVSDPEVGCVHDSRRASSVSDCSVEVEIESGVPEIKVHLAKIERDCRICHLGLESDSQECGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSTTEEVTENSGDSNNANAAASSFSTSAPASSTETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVSSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00569 225 MobiDBLite consensus disorder prediction 163 183 - -
Bva01g00569 225 ProSiteProfiles Zinc finger RING-CH-type profile. 90 156 IPR011016 GO:0008270
Bva01g00569 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 161 IPR013083 -
Bva01g00569 225 SMART ringv_2 97 150 IPR011016 GO:0008270
Bva01g00569 225 CDD RING_CH-C4HC3_MARCH 98 150 - -
Bva01g00569 225 PANTHER ZINC FINGER, RING-CH-TYPE 4 224 - -
Bva01g00569 225 PANTHER OS01G0850200 PROTEIN 4 224 - -
Bva01g00569 225 SUPERFAMILY RING/U-box 95 153 - -
Bva01g00569 225 Pfam RING-variant domain 98 149 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00569 Bva-Chr1 4298831 4302210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00569 62 225 C3H Transcription Factor Family AT5G05830 61.212 2.11e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00569 - - gmx:100808666 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00569 01 4298831 4302210 Bva12g01647 12 13999193 14001924 ECH
Bva01g00569 01 4298831 4302210 Bva01g00569 01 4298831 4302210 ECH