Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00546 ATGGCGGAGGATTTTGAGCCTTACCACGTTCCACAGCAGAGTAGAAGAGATAAGCTTAGAGTTGTGGCTCAGAACCAACCGGGTCTTGTTGAAGGGTGTGCAGCTAATAAAGCAAACCCTGGTTGTGCTGTGAAGGTGGAAGGCTCCAATTTGATGGGATTTGCTGCAGGGGTTATCAatggttcttcttcttcaccttCTGTTTCTCACCACCATGCTTACTTGGATCCTGAATCCTCTTTGCCTGTAAATCCTGGTACAAACGCAATTCAAGTTGTTGGCAATAATCCATTTCTATATCCAGCTCAAAATCTTCAGAATCTGAGAGAATTTGGTCAGAGCTACAGTGGAGGTGAAATGATGGTTTTCAAGCCAGAGATATTGTCTTTATCCCTTTCATCTCACAATTCCCACCAGCCCAATCTTCCACTTGAGCTGAATCTCCAGCGATATGGGTCTGTGATTTACGGTGACAAAGTTAGTGGTGATGGTGGTGGCGGTCTTTGTGTGGTTCCGGGTTTGGTCGGAGGCAGTGCTTCTGCCTCCAATGAATTTCCCCGGAGCCCCGTTCCTATGGGGCCATTCACGGGTTATGCGTCGATTCTCAAGGGATCGAGGTTCCTGAAACCCGCACAGCAGTTATTGGAAGAACTCTGCGACATTGGGAGCCGTGGAGTTAATGCTGAAATGATTGCTCCTGATGCCTCTCTAATGGAACCTCCTTCTGAGAGTTTAAGCCAAAGTGGAATTGCAGATGACACACTCGCATCTGGAGATGGAGGTGAAGGGAGGAAGAAAAAGTCAAGGCTATTCACTATGCTTGATGAGATCTACAGGAGGTATAGGCAGTACTATCAACAGATGCATGCGGTGATAACTTCTTTTGAGTATGTTGCGGGGCTTGGTAATGCAGCTCCCTATGCAAGCTTGGCCATAAAAGCCATGTCAAAGCAATTTAGATGCTTGAAGAATGCTATTACTGACCAGCTTCAGTTCAACAATAAGGCTCATTTTCACTTAAGCAACAGGAAAGATGAATCTCCAAGGTTTGCCAACAACGAGAGAGGCCCCTGTAGCCAAAGACCTCTTCAGAACTCAGGATTTCTTGAGCACCAACCAGTTTGGCGACCTCAAAGAGGACTCCCAGAGCGTGCTGTAACAGTTCTCAGGGCATGGTTGTTTGACCACTTCCTTCACCCCTACCCTACTGATACAGACAAGTTGATGTTGGCTAAACAAACCGGTCTATCTCGCAGTCAGGTGTCAAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCTATGGTGGAAGAAATACATTCTCTAGAAACACGCCAAGctcaaaaaaattcacaaaggGAGGATCATGTTAGGAACGGGTCAAACGATAATTTGCCATCAGAGAACACTGTTCTCTCTGAGAATCCATCTACCTCCACTGATAAGTTTCAGGATGCCCCCTATAAACGCAGTAGAAATGAGCTTCCTGATATGTCAGCAAGGAGTCATGAACAACTCAATCTATCTTATACAAGCAACCAGCCAGTGGGTGTTGGTGGTGGCATGGGGAATGCAAGCAATGGTGTTTCACTGACATTAGGTCTACACCAAAATCATGGGATTGAGTTGTCTGAACCCTTTCCCATGAGTGCAGCTCAACGTTTTGGTCTTGCCCTTGAACCCAATAATGAGGGCTATGTTATGGGTGGTTTTGAATCTCAAGCTCGGCATTTTGGACGTGGTGTGATCGGAGGGCAGCTATTGCATGATTTTGTAGGCTG 1784 0.4529 MAEDFEPYHVPQQSRRDKLRVVAQNQPGLVEGCAANKANPGCAVKVEGSNLMGFAAGVINGSSSSPSVSHHHAYLDPESSLPVNPGTNAIQVVGNNPFLYPAQNLQNLREFGQSYSGGEMMVFKPEILSLSLSSHNSHQPNLPLELNLQRYGSVIYGDKVSGDGGGGLCVVPGLVGGSASASNEFPRSPVPMGPFTGYASILKGSRFLKPAQQLLEELCDIGSRGVNAEMIAPDASLMEPPSESLSQSGIADDTLASGDGGEGRKKKSRLFTMLDEIYRRYRQYYQQMHAVITSFEYVAGLGNAAPYASLAIKAMSKQFRCLKNAITDQLQFNNKAHFHLSNRKDESPRFANNERGPCSQRPLQNSGFLEHQPVWRPQRGLPERAVTVLRAWLFDHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHSLETRQAQKNSQREDHVRNGSNDNLPSENTVLSENPSTSTDKFQDAPYKRSRNELPDMSARSHEQLNLSYTSNQPVGVGGGMGNASNGVSLTLGLHQNHGIELSEPFPMSAAQRFGLALEPNNEGYVMGGFESQARHFGRGVIGGQLLHDFVG 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00546 594 SUPERFAMILY Homeodomain-like 377 442 IPR009057 -
Bva01g00546 594 MobiDBLite consensus disorder prediction 445 497 - -
Bva01g00546 594 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 570 - -
Bva01g00546 594 MobiDBLite consensus disorder prediction 237 265 - -
Bva01g00546 594 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Bva01g00546 594 MobiDBLite consensus disorder prediction 463 485 - -
Bva01g00546 594 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Bva01g00546 594 Gene3D - 378 440 - -
Bva01g00546 594 SMART HOX_1 375 439 IPR001356 GO:0003677
Bva01g00546 594 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 36 570 - -
Bva01g00546 594 MobiDBLite consensus disorder prediction 344 363 - -
Bva01g00546 594 CDD homeodomain 375 436 IPR001356 GO:0003677
Bva01g00546 594 Pfam Associated with HOX 201 327 IPR006563 -
Bva01g00546 594 MobiDBLite consensus disorder prediction 445 462 - -
Bva01g00546 594 SMART prehox3 196 328 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00546 Bva-Chr1 4164934 4169962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00546 1 594 Homeobox Transcription Factor Family AT5G02030 45.095 3.02e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva01g00546 POX 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00546 - - vvi:100266680 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00546 01 4164934 4169962 Bva01g00546 01 4164934 4169962 ECH