Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00526 ATGGAAAAGGGTCAATGTTGGATGTGGAAGAAGAGGAAGTACTCCATGGCCTCTTATGATGATTCCTGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTGGGGCTATGGGGGGCTCCATATGGCCACCAAGATCATATACTTGCAGTTTTTGCAGGAGAGAGTTCCGGTCAGCGCAGGCACTAGGTGGTCATATGAATGTTCATAGAAGGGATAGAGCAAGATTAAAGCAGCCTTCAAGTTCTGCAAATGAAATTCTATATCCTAACCTTGAAACCCCTCATCAAAATCCTCTCCAAAATCCTTTCAAGTCTAATTTGGGTTATTTGCACCCTCGTTCTGCTTGTGAATTGGCTTATAATAACACTAACCCTAATTTTGATCCTTCTCTTCCAGCTTCGTCCCCTCCCTCGCCTTCTAAGGCTTTAGCTCCAATATTTAACAAGAATAGAAGTGAGGAATCCCTGATCCAACCCTATGCTCCTTCTATTCTCCAAAGACACCATACGGCTTCCCCTGTCTACTCCTCAAGATCATGGTCAAACTTggctgaagaaaaaaatttacataagtTTGATATTGATGAGCCTGAACCAATAAATGAGAAGCTCTCAAGAATAGCAGAATCTGAGTGTTGGTCTAAGGTGGATAATGATGAAACTGATGATGTTGCAGTGAGCTTGAATTTGGTTGTCCGTAGAGCTTTCCCACCTGTTGAGTTTGAGACTAAAAAGGAAGAACCCATCAGTTGCAAGAGGAGAAGAACAGATGCTTCATCAGTTCCTTTCTTCCCAAAATCAAGTTCTATTGATAGAAATCATCTTCAGTCAAAGATGTTTGACTTTATTCCTAGCTCCATAGAAGAGCTAGATCTGGAACTGAGGCTTGGTCACAGTCCCAAGGTATA 905 0.4133 MEKGQCWMWKKRKYSMASYDDSWEEQAFAEDAAGAMGGSIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSSANEILYPNLETPHQNPLQNPFKSNLGYLHPRSACELAYNNTNPNFDPSLPASSPPSPSKALAPIFNKNRSEESLIQPYAPSILQRHHTASPVYSSRSWSNLAEEKNLHKFDIDEPEPINEKLSRIAESECWSKVDNDETDDVAVSLNLVVRRAFPPVEFETKKEEPISCKRRRTDASSVPFFPKSSSIDRNHLQSKMFDFIPSSIEELDLELRLGHSPKV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00526 301 Pfam C2H2-type zinc finger 46 70 - -
Bva01g00526 301 SMART c2h2final6 46 68 IPR013087 -
Bva01g00526 301 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 300 - -
Bva01g00526 301 PANTHER OS07G0101800 PROTEIN 1 300 - -
Bva01g00526 301 Gene3D Classic Zinc Finger 43 93 - -
Bva01g00526 301 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Bva01g00526 301 SUPERFAMILY beta-beta-alpha zinc fingers 43 72 IPR036236 -
Bva01g00526 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00526 Bva-Chr1 4061594 4062499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00526 1 299 C2H2 Transcription Factor Family AT2G37740 34.375 1.95e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g00526 zf-C2H2_6 5.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00526 - - pvy:116134396 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00526 01 4061594 4062499 Bva12g02384 12 18065192 18066043 ECH
Bva01g00526 01 4061594 4062499 Bva01g00526 01 4061594 4062499 ECH