Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00514 ATGGCTTCGATGGGATCCTCGTACTGGTGCTACAGATGCAATCAATTCGTTAGGGTTCGAATTGGTGCTGAAGATAATCTGCTCTGCCCTGATTGTGGAGCTGGTTTCGTAGAAGAAATCAGAACCCCTGGTCACTCACCTTTCCATCGATTTCCTGCAGCGGCAATGTATGTGGATGACGGGTCTAACTCCGAGCATGGTTCCAGCCCAAGACTGCGACGGAGCCGAAGGAATGGTGGGGATCGGTCGCCGTTTAACCCGGTTATTGTTCTTCGTGGACCAGCTGatggcggcggcggcggcggaaATGACGGTGTTGGAGCGGAAAGAGGGAGCTTTGAGCTTTATTACAACGAGGGTACTGGTTCGGGTCTTCGGCCTCTACCTGCAAGCGTCACGGAGTTCTTGATGGGTTCTGGATTCGACCATCTTCTTGAGCAGCTGGCTCAGATAGAAGTGACTGGAATTGGGCGATTGGACCAGCCTCCGGCATCGAAGGCTGCGATTGAATCGATGCCCATTATCAAGATTCTTTCTGCTCACGTTTCTGCGGACTCCCATTGTGCTGTTTGTAAGGAACCGTTTGAGCTTGATACGGATGCTCGTGAGATGCCCTGTAAGCACATTTACCATCCTGATTGTATCCTTCCATGGCTTGCAATTCGTAATTCTTGTCCAGTTTGTCGCCATGAGCTACCTACTGAGCTCCGAGGGAATGGCAGTGGTAGAAACTCCCCTTTGTCTGATGGTGGTGGGGATGACGATGCCGTGGGATTAACCATATGGAGACTTCCGGGCGGTGGGTTTGCTGTAGGGAGGTTCACTGGGGGCAGAAGAGCTGCGGAACGTGAACTTCCTGTTGTATACACAGAAATGGACGGTGCATTCAATAATGTTGGTGTTCCAAGAAGGATTTCTTGGGAATCAAGTGTAAGAAGATCAAGAGAGACTCGGGGATTGGGTAGTGTAGTTCGTAACTTCTTCTCATATTTTGGAAGATTTAGGAGTTCCTTCTCTCGTTCCTCCGGTGCTAATTCAGGGTTGAGTGGAAGAACTCGTTCCAGTACAGTATTCACTAGATTTTCAAGGAGGAGGAGCTA 1100 0.4873 MASMGSSYWCYRCNQFVRVRIGAEDNLLCPDCGAGFVEEIRTPGHSPFHRFPAAAMYVDDGSNSEHGSSPRLRRSRRNGGDRSPFNPVIVLRGPADGGGGGGNDGVGAERGSFELYYNEGTGSGLRPLPASVTEFLMGSGFDHLLEQLAQIEVTGIGRLDQPPASKAAIESMPIIKILSAHVSADSHCAVCKEPFELDTDAREMPCKHIYHPDCILPWLAIRNSCPVCRHELPTELRGNGSGRNSPLSDGGGDDDAVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGAFNNVGVPRRISWESSVRRSRETRGLGSVVRNFFSYFGRFRSSFSRSSGANSGLSGRTRSSTVFTRFSRRRS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00514 366 MobiDBLite consensus disorder prediction 59 104 - -
Bva01g00514 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 321 - -
Bva01g00514 366 CDD RING-H2_RNF126_like 188 229 - -
Bva01g00514 366 SMART ring_2 188 228 IPR001841 -
Bva01g00514 366 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Bva01g00514 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 2 321 - -
Bva01g00514 366 SUPERFAMILY RING/U-box 168 235 - -
Bva01g00514 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 235 IPR013083 -
Bva01g00514 366 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
Bva01g00514 366 Pfam Protein of unknown function (DUF1117) 257 361 IPR010543 -
Bva01g00514 366 Pfam Ring finger domain 187 229 IPR001841 -
Bva01g00514 366 MobiDBLite consensus disorder prediction 66 80 - -
Bva01g00514 366 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00514 Bva-Chr1 4006447 4008069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00514 127 247 C3H Transcription Factor Family AT5G01980 42.975 1.26e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00514 - - jre:108979935 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00514 01 4006447 4008069 Bva12g02401 12 18164413 18166336 ECH
Bva01g00514 01 4006447 4008069 Bva01g00514 01 4006447 4008069 ECH