Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00501 ATGGAAATGAAGGAGAGGCAACGTTGGAGAGCTGAGGAGGATGCCTTGTTACGTGCATATGTCAAACAGTACGGTCCCAGGGACTGGAATCTGGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCCAAGTCTTGTTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGGATCAAGAAAGGATCTCTCACTGAAGAAGAGCAGCGTCTTGTCATCCGCCTTCAAGCCAATCACGGcaacaaatggaagaaaattgcTGCCGAAGTTCCTGGTAGAACTGCTAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGGAAAAAAGGAGAATATCAAAGCAGTTGATCCACTTGACGACGGCAAGTACGACAGAATACTAGAGACTTTCGCAGAGAAGCTGGTGAAAGAGCGCCCTGCTCCATCATATCTCATGGCCACTTCCAATGGTGGATTTCTGCATACAGATGCACCAACCACAGCATCAGCATTACTTCCTCCATGGCTTTCAAATTCTAATACCACCACAGCTGTCAGGCCTCCTTCCCCTTCCGTGACTTTGAGCCTTTCTCCAACAGTGGCTGCACCCACATTTCCATGGTTGCAACCAGAGAGAGGACCAGAGAATGCTCCCCTTGTTTTGACTAACGTAACACCTCACGGGCCCGTCCCCGCTTTCGGTGATAACATGCTCATGTCCGAATTAACCGAGTGCTGCAAGGAGTTGGAAGAAGGGCATCGCGCGTGGGCAGCACACAAGAAGGAGGCAACCTGGAGATTAAGGAGAGTGGAGTTGCAACTGGAGTCAGAGAAGGCGAATCGGAGGAGGGAGAAGATGGAAGAATTTGAAGCAAAGATTAAAGCTCTCAGGGAAGAACAGAAAACTGCTCTAGATAGAATTGAAGCAGAATACAGGGAACAGTTGGCTGAACTAAGAAGAGATGCAGAAACCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCAAAGCACTTGAGGCTTACTAAGTTTCTTGAGCAGGTAGGCTGTAGGCCCAGGCTTGCCGAGCCAAATGGAAGATG 1073 0.4856 MEMKERQRWRAEEDALLRAYVKQYGPRDWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQANHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRGKKENIKAVDPLDDGKYDRILETFAEKLVKERPAPSYLMATSNGGFLHTDAPTTASALLPPWLSNSNTTTAVRPPSPSVTLSLSPTVAAPTFPWLQPERGPENAPLVLTNVTPHGPVPAFGDNMLMSELTECCKELEEGHRAWAAHKKEATWRLRRVELQLESEKANRRREKMEEFEAKIKALREEQKTALDRIEAEYREQLAELRRDAETKEQKLAEQWAAKHLRLTKFLEQVGCRPRLAEPNGR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00501 357 PANTHER TRANSCRIPTION FACTOR AS1 3 357 IPR031055 GO:0005634|GO:0006351|GO:0010338
Bva01g00501 357 CDD SANT 65 106 IPR001005 -
Bva01g00501 357 Coils Coil 258 330 - -
Bva01g00501 357 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Bva01g00501 357 Gene3D - 64 120 - -
Bva01g00501 357 ProSiteProfiles Myb-like domain profile. 1 55 IPR001005 -
Bva01g00501 357 Gene3D - 6 60 - -
Bva01g00501 357 SUPERFAMILY Homeodomain-like 6 100 IPR009057 -
Bva01g00501 357 SMART sant 5 57 IPR001005 -
Bva01g00501 357 SMART sant 60 108 IPR001005 -
Bva01g00501 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 59 IPR017930 -
Bva01g00501 357 CDD SANT 8 55 IPR001005 -
Bva01g00501 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Bva01g00501 357 Pfam Myb-like DNA-binding domain 9 70 - -
Bva01g00501 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 3 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00501 Bva-Chr1 3915956 3919994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00501 3 348 MYB Transcription Factor Family AT2G37630 67.486 6.00e-163 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva01g00501 Myb_DNA-bind_6 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00501 K09422 - zju:107430642 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00501 01 3915956 3919994 Bva01g00501 01 3915956 3919994 ECH