Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00498 ATGAGCTCCACTTCGATTCCCGCCACTTCTCTGCAAGCAGAGAAGGACATGGCCGAGGGAAAATTAGAGGAACGTTGTCTGGAGAACAAGCAATCTACTGCTGCTTCAAGCTCCTCTGTGTCAGAGGGAAGTGGCAGTGCTATACACAAGTCCCCAGGGATATCCAGCCCAGCATCTACATCACCCTCTCGTAGGAGGACCACAGGCCCTATAAGGCGTGCAAAGGGTGGTTGGACGGCCCAGGAGGATGAGACATTAAGGAATGCAGTTGCAGCTTATAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTTTTTTCCAGATAGATCAGAAGTGCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACTCAGGAGGAGGATGATAAAATTGTTGAACTGGTATCAAAATATGGACCTACAAAATGGTCTTTGATAGCCAAGTCTTTGCCTGGTCGCATAGGGAAACAGTGCCGTGAGCGGTGGCACAATCATCTGAATcctgagataaagaaagatgCCTGGACTTTAGAGGAGGAACTGGCGCTCATGAATGCTCATCATCTTCATGGGAATAAATGGGCAGAAATAGCGAAGGTCTTACCTGGAAGGACTGATAATGCAATAAAGAATCACTGGAACAGTTCCTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAAACTTCCACCAACTCCAAAGACCAGTTCGCAAGCTGGACGTTCTGCAACTAAAACAATACTTGTTTGTTCAAATAAAGGATTAGAGACAGCTCCTGAAACATCATCAGAAACTACAGACATTAGTAAGGTAGATGATAGTGGCAAGAATCACTTAGAGTCCCCAGGGACATTAAGAGATGTTGGCGAATTGTCAAGTGTTCCTGCAAATGAATCTGCTGACTCTGATTGTGTAGAATGCAAGCCTGGATCATCCAATGTAGATCCCAGCTGCAGCAACTCAGAACCAGTTTCAAGAGATAATTTTGGAATGAATGGTGAGCCAAAACTTGAGGACTTCAGGTTGGTCAGAACATATCTTTCACTGGAAAGTCCTACATGTGGTTCTTTGTGTTATGAGCCTCCACAATTAGAGAATTCAGTTCCTCTGGATTCTCTTcgtttaaatatgttttgcCAGCAAAATGAATACAGCTGTAGTCCAATAATGTCACCTGTTGGTTTCTTCACTCCACCTTGTGTGAAGGGCAGCGAACTATACTCACAGTCTCCTGaatctatattaaaatttgctGCTAGAACTTTCCCGAATACTCCTTCCATATTAAGGAAGAGAAGGACAGGAGTCCAAACACATGCCACTCCCAGTAAAGTTACAAAGATAGATGGGGAAACTCATACTCCGAATGAACAGGAGAGAAGCAAAGATAATTCTGGTTCTGAAGTTGGCAGGTTGTATGAGAGTCCAGCAAGCCATGGGAATTCAATTGATGTTCCCAATAACAAGGCTTTCAATGCATCTCCTCCATACCGGTTAAGATCCAAGCGAACAGCAGTTGTCAAGTCTGTGGAAAAACAACTTGAGTTTGCATTTGATGAAGAGAAACAGGATGCTAGTGTCAACACGAAGGATAAATCTGCTAAAAGGAGCACTTCGACAACTGAAGATTCTTTGCATGAAACAAAATTGGGAGTGACCTA 1685 0.422 MSSTSIPATSLQAEKDMAEGKLEERCLENKQSTAASSSSVSEGSGSAIHKSPGISSPASTSPSRRRTTGPIRRAKGGWTAQEDETLRNAVAAYKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHHLHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPTPKTSSQAGRSATKTILVCSNKGLETAPETSSETTDISKVDDSGKNHLESPGTLRDVGELSSVPANESADSDCVECKPGSSNVDPSCSNSEPVSRDNFGMNGEPKLEDFRLVRTYLSLESPTCGSLCYEPPQLENSVPLDSLRLNMFCQQNEYSCSPIMSPVGFFTPPCVKGSELYSQSPESILKFAARTFPNTPSILRKRRTGVQTHATPSKVTKIDGETHTPNEQERSKDNSGSEVGRLYESPASHGNSIDVPNNKAFNASPPYRLRSKRTAVVKSVEKQLEFAFDEEKQDASVNTKDKSAKRSTSTTEDSLHETKLGVT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00498 561 MobiDBLite consensus disorder prediction 274 288 - -
Bva01g00498 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 121 IPR017930 -
Bva01g00498 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 228 IPR017930 -
Bva01g00498 561 CDD SANT 129 173 IPR001005 -
Bva01g00498 561 MobiDBLite consensus disorder prediction 436 457 - -
Bva01g00498 561 ProSiteProfiles Myb-like domain profile. 122 173 IPR001005 -
Bva01g00498 561 Gene3D - 127 178 - -
Bva01g00498 561 MobiDBLite consensus disorder prediction 262 314 - -
Bva01g00498 561 Gene3D - 74 126 - -
Bva01g00498 561 MobiDBLite consensus disorder prediction 29 67 - -
Bva01g00498 561 CDD SANT 181 224 IPR001005 -
Bva01g00498 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 177 IPR017930 -
Bva01g00498 561 ProSiteProfiles Myb-like domain profile. 70 121 IPR001005 -
Bva01g00498 561 PANTHER MYB-RELATED PROTEIN B-LIKE 34 474 - -
Bva01g00498 561 MobiDBLite consensus disorder prediction 1 80 - -
Bva01g00498 561 SMART sant 126 175 IPR001005 -
Bva01g00498 561 SMART sant 178 226 IPR001005 -
Bva01g00498 561 SMART sant 74 123 IPR001005 -
Bva01g00498 561 MobiDBLite consensus disorder prediction 525 551 - -
Bva01g00498 561 MobiDBLite consensus disorder prediction 525 561 - -
Bva01g00498 561 Pfam Myb-like DNA-binding domain 179 222 IPR001005 -
Bva01g00498 561 Pfam Myb-like DNA-binding domain 75 121 IPR001005 -
Bva01g00498 561 Pfam Myb-like DNA-binding domain 127 173 IPR001005 -
Bva01g00498 561 ProSiteProfiles Myb-like domain profile. 174 224 IPR001005 -
Bva01g00498 561 MobiDBLite consensus disorder prediction 458 475 - -
Bva01g00498 561 Gene3D - 180 254 - -
Bva01g00498 561 PANTHER MYB PROTEIN-RELATED 34 474 - -
Bva01g00498 561 SUPERFAMILY Homeodomain-like 124 220 IPR009057 -
Bva01g00498 561 CDD SANT 78 121 IPR001005 -
Bva01g00498 561 MobiDBLite consensus disorder prediction 436 504 - -
Bva01g00498 561 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00498 Bva-Chr1 3894338 3898816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00498 11 540 MYB Transcription Factor Family AT3G09370 49.815 1.75e-160 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva01g00498 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00498 K09422 - gmx:778081 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00498 01 3894338 3898816 Bva02g01360 02 17267088 17272666 BWGD
Bva01g00498 01 3894338 3898816 Bva01g00498 01 3894338 3898816 ECH