Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva01g00491 | ATGTTCCCAGCAGGTTCCTCAAGATGGAGTGCAACCACAGAGCAGCTCATGATCTTGGAGGAACTGTACAAGAGTGGCGTAAGAACTCCAACAGCTTCTCAAATTCGGCATATAACGACTCACCTTTCTTTCTATGGCAGAATAGAAGGCAAGAATGTGTTCTATTGGTTTCAGAACCACAAGGCTAGGGACAGACAGAAGCTAAGGAGGAAGCTCAACAAGCAACTACAGCTACAGAAGCAGCTGCAGTTCCAGCATTTTCATCTGAATCATAATATGAGTCATCCTTTTCTTGCTGGTTTTGATTCTCTTCCTGATTCTTCTACCCAGAAGTTTTCTTTCTATAGCTCAGTTGGCTTGTTTTCTCAGGGAGGAGCTGCAGGCACACCAGAACAGACAATAAATTGCAGATGGAGGGTGCACAACCCACAAAGTTTCAAGGAGAAAACAGAGATGAAATTCTACGACTGTGGTTGGAAACTTGTGGATGGTGATCATGATGAAGCTTGCTCCTGTTGCACTAAACCTCTCGAGACTCTTGACCTCTTTCCCATAACGGCAACCAGTCCCAAAGAAGAATGCAGTACATCCACCAAGCAGCTCTTTCACTCTATGTCCAATTA | 623 | 0.4446 | MFPAGSSRWSATTEQLMILEELYKSGVRTPTASQIRHITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQKQLQFQHFHLNHNMSHPFLAGFDSLPDSSTQKFSFYSSVGLFSQGGAAGTPEQTINCRWRVHNPQSFKEKTEMKFYDCGWKLVDGDHDEACSCCTKPLETLDLFPITATSPKEECSTSTKQLFHSMSN | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva01g00491 | 207 | Pfam | Homeodomain | 7 | 66 | IPR001356 | GO:0003677 | |
| Bva01g00491 | 207 | CDD | homeodomain | 8 | 67 | IPR001356 | GO:0003677 | |
| Bva01g00491 | 207 | SUPERFAMILY | Homeodomain-like | 7 | 67 | IPR009057 | - | |
| Bva01g00491 | 207 | Gene3D | - | 4 | 67 | - | - | |
| Bva01g00491 | 207 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 1 | 197 | IPR044555 | GO:0003700|GO:0099402 | |
| Bva01g00491 | 207 | PANTHER | WUSCHEL-RELATED HOMEOBOX 3 | 1 | 197 | - | - | |
| Bva01g00491 | 207 | SMART | HOX_1 | 4 | 71 | IPR001356 | GO:0003677 | |
| Bva01g00491 | 207 | ProSiteProfiles | 'Homeobox' domain profile. | 8 | 67 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva01g00491 | Bva-Chr1 | 3861838 | 3862965 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva01g00491 | 5 | 70 | Wox Gene Family | AT1G46480 | 68.182 | 2.44e-27 | 101 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HB-WOX | Bva01g00491 | Homeodomain | 9.7e-17 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva01g00491 | - | - | gmx:102663963 | 214.542 |