Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00481 ATGGATGCAGAGGAAGACTGTTTGGGAATTGATGAGCTAGAGATCTGGCTTCAAAATGGCCTAGACCATAATCTTCCCAGTGTCAATGACGCTTCTATTTTCTATGCTGATTTCCCTCCTCTTCCAGATAATTTCCCACGCCTGccatcatcttcatcttcttccacAACCTCAGCCCCAGCTAAGACCGCCACCTGCTTCTCCTCCTCGCCATCGGCACCTTCCTTGGAGATCCCTCAGCCTATCAACGGCGGCCATGCCGGCGTCCTCAATCATTGCACCACTGATGTCATGGCTACTTTTGGCGTGGACCACATAGAGAGcaatgatttcttttcctccaCTACTTCCATGGAGATCCCTCAACCTGCCAATCATGGCCTCCCAAACGGCGGCAGCTTCAACCATTGTAATATTGATGTGATGGATAATACTTGTGCTTACATGGACCAACTAGATAGCAAAGATTTCCTTGAACTAGCATCAATTTTGCAAAATGTGGAAAACCCTTTAGAGGATCTTGCCCAACAATTGACCCAGCAACAAGAACATGCACTTGATCAACGGCCTCAGCAAGAAGAGGGAGACCCAGATGATGAATTGCTCAAGGTGTTCTTGGAATGGTTTAAGTCAAACAAAGATATTGAGTTTGGGAGTGGGAAGCTTAAAAAAGGAACTATAGAATGTGTTGCTAGGCTTTTGGGTGGAGGAAAAGATGATATGAAGCAATTATGGAAGCTTATTTTTGAATGGATTCAATCAAGTCATCCCCAGAATGAAAGGAGTAGAGAAAGCACATCCtcttcaaatattaataaccAAATTCAGGGTACTTGCCAAAACCCAAACCCAAGCTCATTTGGACTTGACTCAAACACTTCTTTCAACAATACACAATGGATTTCTCCGGAAACGCTGTCTGTGACGGCTCCGGCCACTGCCACGGGGCCTAATCCACCCTTGACTATGGTAGGGTATGTAGGTCACCCTCATTCAAATGGTGCTGGTTCAAATATTCACAATGAATTCCCACCTTGTGCTGATGTTCACAGGCATCTTTGTCCTCCTTCTCAGTTAGGTGTTGGTTCTCACTATAATCAATCTTTCCCGGAGGCCACTGTTACCGCCGGTTATTGTAATCAGTACCCATGTCAGTATTTCCTTGGTCCTGCTAATAGCTTGATGAGATTGGATCCATCGGAGACAAAAGAAGCTAGGAAAAAGAGGATGGTCAGACAGAGACGCTATTTGGCGCATGACAGGCAACAGAAGCAGGACCACAGCACCGACCCAATCACTAGGTTGGGAAGTGGCAATGGCACCATTACAATGGTGTCACATGCAAATCCACTCAGCCAGCAGCTGTATGCCTCTGTTGCTTCTGGTGATGCCACTGCGGCCCTGGTGGTTCCATCGGGAGCCCCGCTCCAACAGGCGGTGGATCCAATGTCCATGCAAAGGCTTAATCATCAAGGTAGACAGGGGTGGAAGCCAAAGAGGGACGTGAGATTCCTCATGAGGAAGGTGTTGAAGGAAAGCGACGTGGGAAATTTGAGGAGGATTGTTTTGCCAAAaAAAGAGGCAGAAAGCCATTTGCCAGAACTAAATGAGTCAAGAAATGGTGTTTCCATTACTGTGGAAGAGATTGGAACTTCTCGTGTTTGGAATATGCGTTATAGATACTGGCCAAACAACAATAGCAGGATGTATCTGCTCGAAAATactgGGGAATTTGTGAGTGTTAATGGACTCAAAAAAGGAGACTCGATACTGTTATACTCGGATGTCAAGTCTGGAAAATACGTTTCATCTGGAATGTCCAAAGAGAGTATAATGGGGTTTTGGCTGAATCTTTTGGTTGTGGGGTTGAGATA 1874 0.4445 MDAEEDCLGIDELEIWLQNGLDHNLPSVNDASIFYADFPPLPDNFPRLPSSSSSSTTSAPAKTATCFSSSPSAPSLEIPQPINGGHAGVLNHCTTDVMATFGVDHIESNDFFSSTTSMEIPQPANHGLPNGGSFNHCNIDVMDNTCAYMDQLDSKDFLELASILQNVENPLEDLAQQLTQQQEHALDQRPQQEEGDPDDELLKVFLEWFKSNKDIEFGSGKLKKGTIECVARLLGGGKDDMKQLWKLIFEWIQSSHPQNERSRESTSSSNINNQIQGTCQNPNPSSFGLDSNTSFNNTQWISPETLSVTAPATATGPNPPLTMVGYVGHPHSNGAGSNIHNEFPPCADVHRHLCPPSQLGVGSHYNQSFPEATVTAGYCNQYPCQYFLGPANSLMRLDPSETKEARKKRMVRQRRYLAHDRQQKQDHSTDPITRLGSGNGTITMVSHANPLSQQLYASVASGDATAALVVPSGAPLQQAVDPMSMQRLNHQGRQGWKPKRDVRFLMRKVLKESDVGNLRRIVLPKKEAESHLPELNESRNGVSITVEEIGTSRVWNMRYRYWPNNNSRMYLLENTGEFVSVNGLKKGDSILLYSDVKSGKYVSSGMSKESIMGFWLNLLVVGLR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00481 624 SMART B3_2 506 609 IPR003340 GO:0003677
Bva01g00481 624 MobiDBLite consensus disorder prediction 415 438 - -
Bva01g00481 624 MobiDBLite consensus disorder prediction 46 72 - -
Bva01g00481 624 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 606 IPR044800 GO:0003700
Bva01g00481 624 MobiDBLite consensus disorder prediction 47 72 - -
Bva01g00481 624 Gene3D - 497 610 IPR015300 -
Bva01g00481 624 SUPERFAMILY DNA-binding pseudobarrel domain 505 602 IPR015300 -
Bva01g00481 624 Pfam B3 DNA binding domain 508 602 IPR003340 GO:0003677
Bva01g00481 624 MobiDBLite consensus disorder prediction 256 288 - -
Bva01g00481 624 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 606 - -
Bva01g00481 624 ProSiteProfiles B3 DNA-binding domain profile. 506 609 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00481 Bva-Chr1 3792637 3795962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00481 2 606 B3 DNA Binding Superfamily AT3G24650 37.591 1.47e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g00481 B3 1.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00481 - - gmx:100795226 452.595