Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00480 ATGGAGGGAAACGAAGAAGGTTTGGGAGTTGGTGAGAGAGAGATCTGGCTTCAGAATGATCAAGACGATGATCTTCTTGGTGTGAATGACGATTCTTTGTTCTATGCTGATTTCCCTCCTCTACCGGATTTTCCATGCATGTCATCGacttcatcatcttcctcaACTCCGGCGCTGCCGGTAAAAACGGTCACTTGCCCCTCCtcgtcgccctcggcgtcgaCTTCTTCCGCTGCTTCATGGGCGGTTTTGAAGTCAGATGCGGAGGACCTCGGCCAGTATCGGTATCATCATTGTTACCAGAGTGATCCAGTGGATGCCACTGCCACACCAGCAGCCCTGTCTTCCACCGCTTCCATGGAGATCCCACAGCCGCCAGATCTCGGGGGTGGCGGCGGAGTCGAGGATTGTTCCATTGACATGATGGATACTTTTGGGTGCATGGACCTTTTAGAGAGCAATGATTTCTTTGACACATCATCGATTTTTCTGAATGAAGAAAACCCTTTGGAGGATTTCCCCCAACAATTCCAACAAGAAGAGGAACataaacaagaacaagaacaaggACATGCATTTCAGACACAGCAACAGCCTCAGCCGGAGACTGTTAACGAAGATCAGAATCAACAGCCACCCAACAACGAGGAAGAGATCATCCAAGGACCAGATGATGAAATGCACAAACTGTTCTTGGAGTGGCTCAAGTCAAACAAAGACTGTGTCTCTGCCAGTGACCTGAGGAACGTGAAGCTCAAGAAGTCCACCATAGAATGTGCTGCTAAGCGTTTGGGCGGAGGAAAAGAGGGCATGAAGAAACTGTTGAAGCTTATTCTCGAGTGGGTTCAGACCAATCATCTTCCGAATAAAAGGCGCAAGGAAACCACACCCTCTTCAAATCTTGTCAACCAATTTCAGGAACCTAACCCTAACCAGACACAATGGATTTCTCCGGCACCGCCGTACGTGACGGATCCAGCTGGTGTCATAACTCCTTATCCACAACAAACGATGGTGGGGTACGTGGGTGGTGACGCTTATAATTCAAACGGTGCTGCCACAAATAATCACAATGGTTACCAACCTGGCAATAACTATCAAATGATGGAATCTCGTCATTCATGGCCTCGGTCTCAGTTTGGTGTTGGTTCTCAGTGCAATAATCAAACGTTGCCGAATATTCACCAAGCGGTGAACGGTTTTGCCGCCGCCGGGTACGGGAATCAGTACGGTTACCCGTATTTCCATGGTCCTGGTGATAGGTTAATGAGGTTGGGTCCATCGGCGACCAAAGAAGCGAGGAAGAAAAGGATGGCAAGGCAGAGAAGGTATTTGCCGCATCACAAGCATGGAAACCTCCACAGCCAGAAGCAGCAGCATAATCAGAGCCACCAGAATCCGAGCACCGACTCGCACACAAGGCTGGGTAGTGATAATAATTGCACCGCTGCGATGGCGGCGCATGCAAACACAATCAACTGGATGCATTGGCCATCTCTTGCTGGTGGGGCCCCTTCTGCCGCACCCGTGGTGCCGGTGGAACCTATTCCGGGGCAGCAGGCGGTGGATCGGACGGCCATGCAAACCCAGAATCTTAATCAGAGTCGAGTATTATCAGAAAGGCGACAGggaTGGATTAAGCCTGAGAAGAACTTGAGGTTCCTTTTACAGAAGGTGTTGAAGCAAAGTGATGTGGGAAATTTGGGAAGAATTGTTTTGCCAAAgAAAGAGGCAGAAAGCCATTTGCCAGAGCTGGAGGCAAGAGATGGCATTGCCATTGCCATGGAAGATATTGGAACTTCTCGTGTTTGGAATATGCGTTATAGATACTGGCCAAACAACAAAAGCAGGATGTATCTGCTTGAGAACACTGGGGAATTTGTGAGAGCCAATGGACTCCAGGAGGGAGATTTCATAGTGTTATACTCAGATGTAAAGAGTGGCAAATATTTGATAAGAGGAGTAAAAGTGAGGCAACCCAGTACCAAGGCAGAGAACAAGAAGGGAGGAAAACCGCAGAAAAACCAGCAAGGAAATGCAGCAACAACAGCTACAGCTGGTGCTAATGCCAATGCCTTGCCATCTTCACCTATCAACTCTCAATtgcagaaaaatgagaaagctGCAGCTAGCAAAATATA 2141 0.4671 MEGNEEGLGVGEREIWLQNDQDDDLLGVNDDSLFYADFPPLPDFPCMSSTSSSSSTPALPVKTVTCPSSSPSASTSSAASWAVLKSDAEDLGQYRYHHCYQSDPVDATATPAALSSTASMEIPQPPDLGGGGGVEDCSIDMMDTFGCMDLLESNDFFDTSSIFLNEENPLEDFPQQFQQEEEHKQEQEQGHAFQTQQQPQPETVNEDQNQQPPNNEEEIIQGPDDEMHKLFLEWLKSNKDCVSASDLRNVKLKKSTIECAAKRLGGGKEGMKKLLKLILEWVQTNHLPNKRRKETTPSSNLVNQFQEPNPNQTQWISPAPPYVTDPAGVITPYPQQTMVGYVGGDAYNSNGAATNNHNGYQPGNNYQMMESRHSWPRSQFGVGSQCNNQTLPNIHQAVNGFAAAGYGNQYGYPYFHGPGDRLMRLGPSATKEARKKRMARQRRYLPHHKHGNLHSQKQQHNQSHQNPSTDSHTRLGSDNNCTAAMAAHANTINWMHWPSLAGGAPSAAPVVPVEPIPGQQAVDRTAMQTQNLNQSRVLSERRQGWIKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAESHLPELEARDGIAIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGEFVRANGLQEGDFIVLYSDVKSGKYLIRGVKVRQPSTKAENKKGGKPQKNQQGNAATTATAGANANALPSSPINSQLQKNEKAAASKI 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00480 713 ProSiteProfiles B3 DNA-binding domain profile. 556 658 IPR003340 GO:0003677
Bva01g00480 713 MobiDBLite consensus disorder prediction 456 478 - -
Bva01g00480 713 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 696 - -
Bva01g00480 713 MobiDBLite consensus disorder prediction 450 478 - -
Bva01g00480 713 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 696 IPR044800 GO:0003700
Bva01g00480 713 SUPERFAMILY DNA-binding pseudobarrel domain 555 651 IPR015300 -
Bva01g00480 713 Pfam B3 DNA binding domain 557 652 IPR003340 GO:0003677
Bva01g00480 713 MobiDBLite consensus disorder prediction 660 713 - -
Bva01g00480 713 SMART B3_2 556 658 IPR003340 GO:0003677
Bva01g00480 713 MobiDBLite consensus disorder prediction 671 713 - -
Bva01g00480 713 MobiDBLite consensus disorder prediction 177 220 - -
Bva01g00480 713 CDD BfiI_C_EcoRII_N_B3 554 655 - -
Bva01g00480 713 MobiDBLite consensus disorder prediction 190 217 - -
Bva01g00480 713 Gene3D - 552 670 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00480 Bva-Chr1 3776522 3779351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00480 1 703 B3 DNA Binding Superfamily AT3G24650 46.306 6.33e-156 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g00480 B3 7.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00480 - - gmx:100795226 728.013