Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00472 ATGGGGGTTCCTCTGAAATGTTTCACTCTTAGCTTTCTGTTCATGGCGCTGATTTTTACTGGTGCGAACGCATTGGACGAGAAAGAGCTTCTTGCACAATCAAGGAATGTCGAAACGGGGAAGTTGCAGAGCTTGAAAAGTTCATCAATGGCGGAAAGGTCACATGATTCTCTGAACGAGCGTGCAGTAGATAACCCAGACGAGATAGCTTCTATGGTTGACACGACCATACGCAATCATACGGAAAGAAGGAACCTTGGTTTCTTCTCATGTGGAACTGGGAACCCAATTGATGATTGCTGGCGCTGTGACCGTCTTTGGTACGCTCGCCGAAAGCGCTTGGCTGACTGCGCAATTGGGTTCGGACGCAATGCCGTAGGTGGCCGTGATGGAAAATTCTATGTTGTGTCTGACCCAGGTGACGACGACCCAGTAAACCCCAAACCGGGCACTCTCCGCCACGCAGTGATCCAAGACGAACCCTTGTGGATTGTGTTCAAAAGGGACATGGTCATCACCTTAAAGCAAGAGCTTATCATGAACAGCTTCAAGACCATCGATGGGCGTGGTGCCAATGTGCACATTGCCTATGGAGCTTGCATTACAATCCAATACATCACCAATGTCATCATCCATGGCTTACACATCCATGACTGCAAGCCCACTGGTAACGCCATGGTTCGTAGCTCACCATCACATTATGGATGGAGGACTATGGCTGATGGGGATGCAATTTCCATCTTTGGATCGAGCCACATCTGGGTTGACCACAATTCACTCTCCAATTGCGCAGATGGCCTTGTTGATGCTGTAATGGGGTCCACTGCAATTACCATTTCCAATAACTACTTCACCCACCACAATGAGGTTATGTTATTGGGTCACAGTGACTCTTACGTGAGGGACAAGCAAATGCAAGTGACCATTGCCTACAACCATTTTGGTGAGGGGCTAATCCAAAGAATGCCAAGGTGCAGACATGGATATTTCCATGTGGTAAATAATGACTACACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACAATCAACAGCCAGGGCAATCGATACCTTGCTCCTCAGAACCCTTTTGCTAAGGAGGTAACGAAAAGGGTGGACACAGCACAAGGAGTATGGGGACATTGGAATTGGAGGTCAGAGGGAGACCTTCTGCTGAATGGAGCCTATTTCACATCATCAGGAGCTGGAGCTGGTGCTAGCTATGCCAGAGCCTCGAGTTTAGGTGCCAAATCCTCTTCTTTGGTTGGTTCCCTAACCTCTGGTGCTGGTGTTCTTAGCTGCCGCAGAGGTGTCAGATGTTA 1331 0.4869 MGVPLKCFTLSFLFMALIFTGANALDEKELLAQSRNVETGKLQSLKSSSMAERSHDSLNERAVDNPDEIASMVDTTIRNHTERRNLGFFSCGTGNPIDDCWRCDRLWYARRKRLADCAIGFGRNAVGGRDGKFYVVSDPGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNPFAKEVTKRVDTAQGVWGHWNWRSEGDLLLNGAYFTSSGAGAGASYARASSLGAKSSSLVGSLTSGAGVLSCRRGVRC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Bva01g00472 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Bva01g00472 443 Gene3D - 94 436 IPR012334 -
Bva01g00472 443 Pfam Pectate lyase 177 358 IPR002022 -
Bva01g00472 443 PANTHER PECTATE LYASE 15 440 - -
Bva01g00472 443 SUPERFAMILY Pectin lyase-like 72 437 IPR011050 -
Bva01g00472 443 SMART amb_all 169 366 IPR002022 -
Bva01g00472 443 PANTHER PECTATE LYASE 18-RELATED 15 440 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00472 Bva-Chr1 3731329 3736065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00472 31 443 Polysaccharide Lyase AT4G13710 76.485 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00472 K01728 - gmx:100809277 769.615