Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00469 atggTGCTGATGCAACAGGAAGACACGGAAGAGCAAAATGTGAATCTCCCAAAATCACAAGCTCTAAAGTCCACGAATTGTGATGCTGATAGAGAAGCTTCCGATGGCTTCGAAACTGCCAGCGAAGCCGAATTGGGCAGTGATGGTGACGATGACGGCGGAGAGAATGAACAGAAGGAACATCCGCTGCAGCAACAAGATAGTCGTGGAGAGCGAGAACACAAGCAGCAGCAGCGGCTAGAGCGAAGTGTTCCTCAGGAAAAAGGTGATTCTTCGGGGGATGCCTCAAACAATGAGGACATGATACAGAATGCATTGTCTCAAGCCAATGAAGCAAAGCTAGAAGGAAATAAACTGTTTGCAGATGGGAAGTATGAAGAGGCACTGTCACAATATGAACTTGCTTTACAAATCACAGCAGAGGTGCCTTCATCAATGGAAATACGTTCAATATGTCATTCAAACCGTGCTGTATGCTTTCTGAAAATGGGAAAATATGAGAACACAGTCAAAGAATGCACAAAAGCATTAGAACTCAATCCTGTTTATGTTAAAGCTTTGGTGAGAAGAGGAGAGGCTCATGACAAGCTTGAACATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAGATTGATCCCTCAAATGATCAAGCTAGAAAAGCCATTCGCCGACTGGAGCCCCTGGCTGCAGAAAAGCgtgaaaagatgaaagaagaaatgatggcaaaactaaaagaaatggGCAATTCTGTGCTGGGCCGCTTTGGTATGAGCGTTGACAACTTCAAAGCTGTCAAAGATCCAAACACCGGTTCATATTCTGTCTCATTCCAAAGCTA 845 0.4201 MVLMQQEDTEEQNVNLPKSQALKSTNCDADREASDGFETASEAELGSDGDDDGGENEQKEHPLQQQDSRGEREHKQQQRLERSVPQEKGDSSGDASNNEDMIQNALSQANEAKLEGNKLFADGKYEEALSQYELALQITAEVPSSMEIRSICHSNRAVCFLKMGKYENTVKECTKALELNPVYVKALVRRGEAHDKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREKMKEEMMAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSVSFQS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00469 281 Coils Coil 95 115 - -
Bva01g00469 281 SUPERFAMILY TPR-like 102 228 IPR011990 GO:0005515
Bva01g00469 281 ProSiteProfiles TPR repeat profile. 184 217 IPR019734 GO:0005515
Bva01g00469 281 Gene3D Tetratricopeptide repeat domain 98 253 IPR011990 GO:0005515
Bva01g00469 281 SMART tpr_5 184 217 IPR019734 GO:0005515
Bva01g00469 281 SMART tpr_5 109 142 IPR019734 GO:0005515
Bva01g00469 281 SMART tpr_5 150 183 IPR019734 GO:0005515
Bva01g00469 281 MobiDBLite consensus disorder prediction 1 27 - -
Bva01g00469 281 MobiDBLite consensus disorder prediction 52 88 - -
Bva01g00469 281 Pfam Tetratricopeptide repeat 152 181 IPR001440 GO:0005515
Bva01g00469 281 MobiDBLite consensus disorder prediction 1 98 - -
Bva01g00469 281 Pfam Tetratricopeptide repeat 185 217 IPR013105 -
Bva01g00469 281 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 51 281 - -
Bva01g00469 281 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 51 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00469 Bva-Chr1 3711032 3713882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00469 106 251 Calmodulin-binding Proteins AT3G25230 37.013 1.80e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00469 K24926 - cpap:110816478 334.724