Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00447 ATGGGTTACATGCCACGACGACCTGTGGCGGGCCAGTTCACGGacaagagaagaagatttttAGTCATTGAGGTTCTGTGTATGAAGTCGAGTATGGCGCAGAGTAACTGGGAAGCTGATAAAATGCTTGATGTTTACATTCATGATTAtctgttaaaaagaaaactacacGCCTCTGCGAAAGCTTTTATGACTGAGGGGAAAGTTGCCACGGATCCTGTGGCAATTGATGCTCCTGGcggatttctttttgaatggTGGTCTGTCTTTTGGGACATATTCATTGCAAGGACAAATGAGAAACATTCTGAGCCTGCTGCAGCTTACATTGAGAACCAGCAAATGAAGGCCAGAGAACAACAACTTCAGATGCAGCAATTGCAACTCATGCAGCAGCGGAATGCACAGTTACAACGAAGAGATCCTAGTCATCCTGCTATAGGCAGTCCCTTAAATGCCATACACTCTGAAGGAATGTTGGGTCAGCCACCAGCCAATGTGTTAGCCTTGAAAATGTATGAAGAGCGAATGAAACACCCTCAATCAATGGACTCAGAGGCATCTCCCGCTCTTCTTGATGCCAATAGGATAGCCTTTCTCAAATCATCCACCAGTCATCAAGGCCAGTTGGTACAAGGTAATTCAGGGAATATGTCCACTGCATTGCAGCAAATTCAGGCACGGAGTCCTCTTGGCTCTGATATTAAACCAGAAATTAACTTAGGTGCCACTACAAAGAGTTTGCCTATGGATGCATCAGTATATAGACAAGCAATTTTGCAGTCAAAATCTGGGTTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGACTTCCACTGAAGGGTTGGCCTCTAACTGGGATTGATCAACTACGGCCTAATTTAGGTGTTCAAGTTCAGAAACCTAATTTGACAACCCAAAACCAATTGCTTATGATATCACAACAGCAGCAGGTCTTAGCACAGGTTCAGGCACAAAATAACCTTGGAAATTCTGCTAACTATGGTGATATGGATCCCCGTAGACTTAGTTCTCTGCCTCGAGGTAACTTGAATGCAAAGGACGGACAGTCCACCAGGAATGAAGGATCTATGTGCTCCCAAGTGCAATCTGGCTCCCCTAAGATGAAGATGGCCCAGATGCAACACTCTTCATCTCAACAAGAGCAATTGCAGCAGCAACTACATCAGAAtaacagaaaaaggaaacagcATTCTTCGTCAGGGCCTGTCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCACCCAATTCACCACCATCAACACACACACCTGGTGATGGAATAAATACAGCAAGTAGCATGCAGCACGTGAACAGTGTGTCAAAGAGCTTGATGATGTATGGTACAGAGGGTACAGGAGGCCTTGCATCCTGTTCAAATCTTCTGCAGGAGGACATGGAACGATTTGGAGATGTCAGTACCTTAGAAGATAATGTAGAGTCCTTGTTATCAAATGATGGAGGAGATGGTGGTAATCTTTATGGAACAGTAAAGCCAAGTCCATCTGAGCACCAAAAAGAGTCATCAAAAGGTTTCACCTTTGCTGAATTCGGTTGCATAAGAACAAGGAACAACAGCAAAGTTACTTGCTGCCATTTCTCCTCAGATGGAAAGATGCTTGCTAGTGCTGGACATGACAAGAAGGTTGTCCTCTGGAACATGGACAATTTACAGACAGAAAACACTCCTGATGAACACAAATCAGTCATTACAGATGTGCGTTTTAAACCAAATTCGTCTCAGTTGGCAACAGCCTCAGTTGATAAAACTGTGCGACTATGGGATGCTGCCAATCTAACCTATTGTCTGAAAGAATATTGTGGGCGCAATTCACCTGTTATGTCTCTCGATTTCCACCCTCAGAAAACTgatcttttctgtttctgtgATGGTGATAATGAAATTCGCTATTGGAATATTAACTCATCCTCTTGCACCCGTGTATCCAAGGGAGGTACTGCACAAGTGAGGTTTCAGCCAAGACTGGGTCGTCGATTGGCAGCTGCATCTGATAAAGTAGTGACAATATTTGATGTTGAAACTGACAGCCAAATATTCTCATTACAGGGTCATCTTGAAATGGTGAACTATATTTGCTGGGATGCAAATGGAGATTTCCTGGCATCTGTAAGTCTGAACTGCGTGAAAATTTGGTCACTGGTCTCAGGAGAATGCGTTCAGGAGCTCAATTCCAGTGGGAACCAGTTCCTTTCCTGTGTTTTTCATCCAAGTTATTCTACTTTGTTGGTGATTGGAGGGCTTTCTTCCTTGGAGCTTTGGAACATGGCCGAGAATAAAAGCATGACAATCCTAgcacatgaaaatataatctcTGCTTTGGCACAGTCTCCTGTCACTGGAATGGTGGCCTCTGCTAGTCATGACAGCTCTGTCAAGTTATGGAAATG 2435 0.4222 MGYMPRRPVAGQFTDKRRRFLVIEVLCMKSSMAQSNWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIENQQMKAREQQLQMQQLQLMQQRNAQLQRRDPSHPAIGSPLNAIHSEGMLGQPPANVLALKMYEERMKHPQSMDSEASPALLDANRIAFLKSSTSHQGQLVQGNSGNMSTALQQIQARSPLGSDIKPEINLGATTKSLPMDASVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLTGIDQLRPNLGVQVQKPNLTTQNQLLMISQQQQVLAQVQAQNNLGNSANYGDMDPRRLSSLPRGNLNAKDGQSTRNEGSMCSQVQSGSPKMKMAQMQHSSSQQEQLQQQLHQNNRKRKQHSSSGPVNSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHVNSVSKSLMMYGTEGTGGLASCSNLLEDMERFGDVSTLEDNVESLLSNDGGDGGNLYGTVKPSPSEHQKESSKGFTFAEFGCIRTRNNSKVTCCHFSSDGKMLASAGHDKKVVLWNMDNLQTENTPDEHKSVITDVRFKPNSSQLATASVDKTVRLWDAANLTYCLKEYCGRNSPVMSLDFHPQKTDLFCFCDGDNEIRYWNINSSSCTRVSKGGTAQVRFQPRLGRRLAAASDKVVTIFDVETDSQIFSLQGHLEMVNYICWDANGDFLASVSLNCVKIWSLVSGECVQELNSSGNQFLSCVFHPSYSTLLVIGGLSSLELWNMAENKSMTILAHENIISALAQSPVTGMVASASHDSSVKLWK 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00447 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 564 - -
Bva01g00447 810 SMART WD40_4 524 561 IPR001680 GO:0005515
Bva01g00447 810 SMART WD40_4 771 810 IPR001680 GO:0005515
Bva01g00447 810 SMART WD40_4 564 603 IPR001680 GO:0005515
Bva01g00447 810 SMART WD40_4 607 647 IPR001680 GO:0005515
Bva01g00447 810 SMART WD40_4 730 769 IPR001680 GO:0005515
Bva01g00447 810 SMART WD40_4 689 727 IPR001680 GO:0005515
Bva01g00447 810 SMART WD40_4 650 686 IPR001680 GO:0005515
Bva01g00447 810 Pfam LisH 41 67 IPR006594 GO:0005515
Bva01g00447 810 ProSiteProfiles LIS1 homology (LisH) motif profile. 39 71 IPR006594 GO:0005515
Bva01g00447 810 SUPERFAMILY WD40 repeat-like 532 810 IPR036322 GO:0005515
Bva01g00447 810 CDD WD40 533 810 - -
Bva01g00447 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 656 IPR001680 GO:0005515
Bva01g00447 810 MobiDBLite consensus disorder prediction 331 441 - -
Bva01g00447 810 Pfam WD domain, G-beta repeat 693 727 IPR001680 GO:0005515
Bva01g00447 810 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Bva01g00447 810 Pfam WD domain, G-beta repeat 777 810 IPR001680 GO:0005515
Bva01g00447 810 Pfam WD domain, G-beta repeat 570 603 IPR001680 GO:0005515
Bva01g00447 810 ProSitePatterns Trp-Asp (WD) repeats signature. 548 562 IPR019775 -
Bva01g00447 810 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 33 810 IPR044716 GO:0003714
Bva01g00447 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 603 IPR001680 GO:0005515
Bva01g00447 810 Gene3D - 514 658 IPR015943 GO:0005515
Bva01g00447 810 MobiDBLite consensus disorder prediction 350 397 - -
Bva01g00447 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 778 810 IPR001680 GO:0005515
Bva01g00447 810 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 33 810 - -
Bva01g00447 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 778 810 - -
Bva01g00447 810 MobiDBLite consensus disorder prediction 404 441 - -
Bva01g00447 810 Coils Coil 110 140 - -
Bva01g00447 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 570 IPR001680 GO:0005515
Bva01g00447 810 SMART Lish 39 71 IPR006594 GO:0005515
Bva01g00447 810 PRINTS G protein beta WD-40 repeat signature 590 604 IPR020472 -
Bva01g00447 810 PRINTS G protein beta WD-40 repeat signature 548 562 IPR020472 -
Bva01g00447 810 PRINTS G protein beta WD-40 repeat signature 797 810 IPR020472 -
Bva01g00447 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 603 - -
Bva01g00447 810 Gene3D - 659 810 IPR015943 GO:0005515
Bva01g00447 810 MobiDBLite consensus disorder prediction 491 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00447 Bva-Chr1 3592692 3601015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00447 547 728 U-box Gene Family AT2G33340 27.513 3.91e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva01g00447 WD40 0.055 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00447 - - qsu:111995984 1231.08