Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00446 ATGGAGATTGACAAAatggaaaacagaaaagatgtCGGCCGTgaaggaggagaagaagaattgTCCGATTCCTTCGTTTGTTGCGTTTGTTtGGATCTAATATACAAGCCCATTGTACTGTcttGTGGTCACATATCCTGTTTCTGGTGTGTTCACAAATCTATGGATGCTCTGCGTGAGTCTCATTGTCCAATTTGTAGACATCCATACTATCACTTTCCAACCATCTGTCAGATGCTTCACTTCTTGCTTTTGAAGATGTATCCTGTTGCTTACAAAAGAAGGGAACTTCAAACTTTAGaggaagaaaagaaatctggCTTTTACTCACCTCAGCTCAAAGCTGATGCATGTGGAACACAAGCTAAATTTCTCTATCCAGGCAGTTCATCTTCCTGCTCTATCATAACTGCTGACTCTAACTCATGTCCAACTTCTTCATTTAGTAACGGCAAGGAATCTTCCGCACATCCGGAACAATCAGGGCCTGCTTCacataaaaatgatgaagacACTATCTATTCTGAACATACTTCCGGTGCAACAACTGTATCTGTTGGGACTCTGAGTCCTCCTGTTGAAGGAAAAAGTTTTCCTCAGAGTGAACAACATGGCCAACAGAAGATTTCAGTTGCAGATTTGATGTGTGCAGCATGCAAGCAGTTGCTCTTTAATCCTGTTGGTCTTAACTGTGGTCATGTATATTGTGAAGCTTGCATCCTCACCTCAACTGATGAGATGCTTAGATGTCAGGTTTGTCATAGTCCACACCCAAGAGGATATCCAAAAGTCTGTTTGGAGCTTGATCACTTTTTGGAGGAAAAATTCCCTGAAGAATATGCACGACAAAGAGATACTGTTCAACTTAGACAAATCAAAGTCAAACCTGAGTCCGCTTCTTCCTGTTTACTGGTTACGGGTAGTGAAGGAGAAAATCAAGTAGGATGGTGGTCTGATCCTCAATCAAAAGTTCACATAGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGGGATAGATATAGATGCAAAGACTGTAAGGAGAAAATTGGTTTTGATCTTTGCGGCGATTGCCATAGCTCTCGCTCCAAGCTTCCGGGCCGGTTCAATCAGCAGCATACCTCAGAGCACCAGTTTGAGCTTGTAGAAACAAACATTATACGTAATATAATGATGAGGCTGGTTACTGGACAGTTAGAGGATGGCTCAACTGTGCCCttagaaaatttagaattgaTATCTGAAGAAAACCCTTTGTTTGATGATGGAGAAGATGATCAGCATGGCGCCGGAGCCACCGATCAAAACTTGTA 1319 0.3942 MEIDKMENRKDVGREGGEEELSDSFVCCVCLDLIYKPIVLSCGHISCFWCVHKSMDALRESHCPICRHPYYHFPTICQMLHFLLLKMYPVAYKRRELQTLEEEKKSGFYSPQLKADACGTQAKFLYPGSSSSCSIITADSNSCPTSSFSNGKESSAHPEQSGPASHKNDEDTIYSEHTSGATTVSVGTLSPPVEGKSFPQSEQHGQQKISVADLMCAACKQLLFNPVGLNCGHVYCEACILTSTDEMLRCQVCHSPHPRGYPKVCLELDHFLEEKFPEEYARQRDTVQLRQIKVKPESASSCLLVTGSEGENQVGWWSDPQSKVHIGVGCDFCGMFPIIGDRYRCKDCKEKIGFDLCGDCHSSRSKLPGRFNQQHTSEHQFELVETNIIRNIMMRLVTGQLEDGSTVPLENLELISEENPLFDDGEDDQHGAGATDQNL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00446 439 MobiDBLite consensus disorder prediction 147 204 - -
Bva01g00446 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 149 IPR013083 -
Bva01g00446 439 Pfam Zinc finger, C3HC4 type (RING finger) 26 70 - -
Bva01g00446 439 ProSiteProfiles Zinc finger ZZ-type profile. 325 389 IPR000433 GO:0008270
Bva01g00446 439 Gene3D - 318 384 IPR043145 -
Bva01g00446 439 SUPERFAMILY RING/U-box 211 257 - -
Bva01g00446 439 Pfam Zinc finger, ZZ type 326 365 IPR000433 GO:0008270
Bva01g00446 439 ProSiteProfiles Zinc finger RING-type profile. 216 254 IPR001841 -
Bva01g00446 439 ProSiteProfiles Zinc finger RING-type profile. 27 67 IPR001841 -
Bva01g00446 439 SUPERFAMILY RING/U-box 317 385 - -
Bva01g00446 439 SUPERFAMILY RING/U-box 20 77 - -
Bva01g00446 439 SMART ring_2 216 253 IPR001841 -
Bva01g00446 439 SMART ring_2 27 66 IPR001841 -
Bva01g00446 439 MobiDBLite consensus disorder prediction 419 439 - -
Bva01g00446 439 MobiDBLite consensus disorder prediction 175 204 - -
Bva01g00446 439 Pfam RING-type zinc-finger 216 244 IPR027370 -
Bva01g00446 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 282 IPR013083 -
Bva01g00446 439 PANTHER UNCHARACTERIZED 14 419 - -
Bva01g00446 439 CDD RING-HC 27 66 - -
Bva01g00446 439 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Bva01g00446 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 14 419 - -
Bva01g00446 439 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00446 Bva-Chr1 3584750 3590404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00446 18 67 C3H Transcription Factor Family AT1G74990 41.176 1.35e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00446 - - gmx:100782681 556.984