Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00396 ATGAGCTCTCGGGCAGTCAGAGGGGCTGCTGTCAGAAGTTACCGGCGGAGGAAGACGGCCTTGGATTTGGACCTCAATCGTGTCCCCCCAAGTGAGAATCACGAGCAAGAGGGAACTTCAAATCAAATGGAACCTCAAGTTGTTCAAGCTGGGCAACAACCGCATTCTGAACAGCCTGCATTTATTGATGTGGAGGCCATTGATGATGATGTTGTTGAATCTTCTCCAATGGCTTTTGCTGAGGCTAAAACCAACGCAAGGAGAAACCGTGGGAGGATTATAGTTGATTTGGTTAATTCAGAAGATCGAGTTAGggtgaataataataatcgcAACAAACGAAGAAGAGATTCTACGAGTGAAGCTATTAATtgtgaaatttatataaacttgGAAAGCAGTAGCAGTTCTATGAGGAAATATGTTACAATGGAGCCTGAACCACCAAAGGAGCCTGTTTTTAACTGTCCAATATGCATGGGGCCATTGGTTGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATTAAGGCTGCAATATGTGTACAGAATAAATGCCCGACCTGTAGGAAGAAGGTTACTGTAAAACAACTTATTAGGGTGTTTCTCCCCTCAACCACTTG 635 0.4126 MSSRAVRGAAVRSYRRRKTALDLDLNRVPPSENHEQEGTSNQMEPQVVQAGQQPHSEQPAFIDVEAIDDDVVESSPMAFAEAKTNARRNRGRIIVDLVNSEDRVRVNNNNRNKRRRDSTSEAINCEIYINLESSSSSMRKYVTMEPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKNCIKAAICVQNKCPTCRKKVTVKQLIRVFLPSTT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00396 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 210 IPR013083 -
Bva01g00396 211 SMART ring_2 156 193 IPR001841 -
Bva01g00396 211 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Bva01g00396 211 Pfam Zinc finger, C3HC4 type (RING finger) 155 193 - -
Bva01g00396 211 PANTHER ELFLESS, ISOFORM B 11 210 - -
Bva01g00396 211 MobiDBLite consensus disorder prediction 32 55 - -
Bva01g00396 211 MobiDBLite consensus disorder prediction 15 31 - -
Bva01g00396 211 SUPERFAMILY RING/U-box 155 200 - -
Bva01g00396 211 MobiDBLite consensus disorder prediction 1 55 - -
Bva01g00396 211 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
Bva01g00396 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF4-LIKE 11 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00396 Bva-Chr1 3275009 3279149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00396 12 210 C3H Transcription Factor Family AT5G48655 51.741 4.56e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00396 K22651 - gmx:100792853 267.7