LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva01g00356	ATGGGGCCAAATGCCCGTTCTTTGTCTCCGGTGGCAAGACAAGCCGAAAAACTCAAAACAGACGGCAACCATTACTTCAAAAGGGATCGCTTCGGAGCTGCAATTGATGCTTACACGGAGGCAATTACACTGTGCCCGAACGTTCCGGTTTATTGGACAAATCGTGCTCTCTGTCATCGCAAACGCAATGATTGGGTAAGAGTAGAAGAAGACTGTCGCAGAGCAATTCAGCTTGACAACAAATCAGTCAAGGCCCACTATATGTTGGGGCTTGCATTGCTACAGAAACAAGAATATACCACCGGAATCATTGAACTGCAGAAGGCTCTGGAACTTGGAAGGGGTGCTAACCCTAATGGCTATATGGTAGAGGAGATCTGGGAGGAACTTGCAAAAGCAAAATACGAGGAGTGGGAACGAGCATCTACCGTCAGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGTGGTTGCTCTGAAGGAAAAATATGTTCTTGATGTCTCCCAAATGGAAGGATTTGTAGATGAAGCTACCACATCGCACACAGAACAACTAGAGGCTTTAGGAAGAGTTTTCGATAAAGCATCAGAGGCTGATAATCCTACTGAGGTGCCGGATTACCTCTGCTGTAGAATCACACTTGATATTTATCGCGACCCTGTCATTGCCCCAAGTGGACATACATATGAGAGGGCTGTGATTCTTGATCATCTTGAGAAGGTGGGTCCGTTCGATCCTGTCACGCGCGAATCCCTCCATCCATCACAACTAGTACCAAACTTGGCAATCAAAGAAGCAGTCCAAGCATTTTTGTATAAACATGGGTGGGCATATAAGATGTA	845	0.4592	MGPNARSLSPVARQAEKLKTDGNHYFKRDRFGAAIDAYTEAITLCPNVPVYWTNRALCHRKRNDWVRVEEDCRRAIQLDNKSVKAHYMLGLALLQKQEYTTGIIELQKALELGRGANPNGYMVEEIWEELAKAKYEEWERASTVRSWELQSLKEACVVALKEKYVLDVSQMEGFVDEATTSHTEQLEALGRVFDKASEADNPTEVPDYLCCRITLDIYRDPVIAPSGHTYERAVILDHLEKVGPFDPVTRESLHPSQLVPNLAIKEAVQAFLYKHGWAYKM	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva01g00356	281	SUPERFAMILY	RING/U-box	197	279	-	-
	Bva01g00356	281	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE CHIP	7	280	IPR045200	GO:0000209\|GO:0061630
	Bva01g00356	281	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	203	281	IPR013083	-
	Bva01g00356	281	ProSiteProfiles	TPR repeat profile.	15	48	IPR019734	GO:0005515
	Bva01g00356	281	Pfam	Tetratricopeptide repeat	84	112	IPR019734	GO:0005515
	Bva01g00356	281	Pfam	U-box domain	205	277	IPR003613	GO:0004842\|GO:0016567
	Bva01g00356	281	ProSiteProfiles	U-box domain profile.	204	278	IPR003613	GO:0004842\|GO:0016567
	Bva01g00356	281	SMART	Ubox_2	208	271	IPR003613	GO:0004842\|GO:0016567
	Bva01g00356	281	PANTHER	CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN-RELATED	7	280	-	-
	Bva01g00356	281	CDD	RING-Ubox_CHIP	205	271	IPR045202	-
	Bva01g00356	281	SUPERFAMILY	TPR-like	14	134	IPR011990	GO:0005515
	Bva01g00356	281	Gene3D	Tetratricopeptide repeat domain	11	145	IPR011990	GO:0005515
	Bva01g00356	281	SMART	tpr_5	83	116	IPR019734	GO:0005515
	Bva01g00356	281	SMART	tpr_5	15	48	IPR019734	GO:0005515
	Bva01g00356	281	SMART	tpr_5	49	82	IPR019734	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva01g00356	Bva-Chr1	3056424	3060532	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva01g00356	15	281	U-box Gene Family	AT3G07370	71.536	1.12e-144	405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva01g00356	K09561		-	gmx:100796519	452.981