Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00331 ATGTTCTCGTCCTTGCTGCCTCTTTTGAAGGAGGatagaggaagaagagggAGCGTGGGAGAGGAAGAGATCGATAGAGAGAAAGACGCTGGGGAGAGTGAAAGAGTATCAAAGGGAAAGACTATTGTGAATGTTTTGATGGCTGGCAATCCCTATCCCCAGCCTTTTGTCAACCCCCACATGCATCAGTTTGGATTTCAAAGCATAGAAGCAGCAGAATCAAGGCCTTTGGCTGAGGAGTCACCAGTCACACTTTTAATTAGGCACCTTCCTGAATCTATTCCTCATGACACCCTTTCTCGGCTCTTATCCCATTTTGGTGCTTCCTCAGTTCGGCCTTGCTCAAGTGGAAGGTTGAGAAATTGTGCTTTTGCTGATTTCAAAAATGATATCCTAGCATCTCAAGCACAATGTCAACTGAACGGGTTGAGATTTCTTGGTAAAGTCTTGTCTGTGGAGAGAGCTAGTAACTCAAATGAGAGCAGTGAAAAAAACTCTGGAGCTCAACTGGGAAGGGATTCCAAATCATCTGCGGCAAAGAATGCAAATTTGTCCAAACCTCTTGATGAAGGTTCTAAATCAGCAATACTTCCTTCTCCTGAACCAATTGCTGCAAGACTTGGTGTGGACTATCCATTTCCTCCTCACCTagaGTATGCTTACCCTCCACCAGATGGAAATATTCTAACCAACATTGTAAATGCTCTAATTGCTGTTCCCCGCTTTTATACTCAGGTGCTACACCTTATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCACTTCCTACTCCGCCCCTACCTCCACAGGCACCAGTTGCACCGCCGCAGCCACCGCCACCGCCAccacctccacctccaccCCCTTCTGTTTCCGTGAAGCGTCGGTCTGCAGATCTATCCAGTGGTGAATCAGAGATGGAGTCCTCAGATGAGGAGGTTGATGGGAATACAAATTCTATGGGTATGGCAAGAAAAGCAGAATCTAGAACAAAGCGTGTGAAGCACGAAGCCATTGTTGGCCCTGCTATTGATAAAAATGTAGCTCATGAAGCTGTTGGAGTAAAACCAGCAACTTTGGTCCCAAAAGAAATCCCagtgataaaaaagaagaacccTATCTTACAGATTAGAATAACTCCTAAAGCAATCCACAATGAAGATAAAGATGGCGACAAGATAGAAGAGTTGGTGGAGCCAGAAAAGGAGATTCAAGATCCGAAAAAATTTTTGACTCCCGAAGAATTAGAAAGTGGAAAGTTGCCACCAGAggaaattttatctcttccaATGTTTAAGAGCTATACGGCTGGAAATCCCGCTCCTgtgttatatattaagaatttggCCAAAGACGTGATTGTTGatgatttctattttatatttgGTTCCTTGTTTGGAAGTGTTGAAGCCGCTAAGTCTGGTCTTCATGTCAAGCTGATGCAGGAGGGAAGAATGAGGGGTCAAGCTTTTTTGACATTCCCATCAATTGAACTGGCTCATCAGGCTTTGAATCTAGTGAATGGGTATGTATTCAAAGGCAAGCCCATGATCATCCAGTTTGGTCGTAATCCTGCTGCTGCCAAAGGAACTTA 1598 0.4155 MFSSLLPLLKEDRGRRGSVGEEEIDREKDAGESERVSKGKTIVNVLMAGNPYPQPFVNPHMHQFGFQSIEAAESRPLAEESPVTLLIRHLPESIPHDTLSRLLSHFGASSVRPCSSGRLRNCAFADFKNDILASQAQCQLNGLRFLGKVLSVERASNSNESSEKNSGAQLGRDSKSSAAKNANLSKPLDEGSKSAILPSPEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPQAPVAPPQPPPPPPPPPPPPSVSVKRRSADLSSGESEMESSDEEVDGNTNSMGMARKAESRTKRVKHEAIVGPAIDKNVAHEAVGVKPATLVPKEIPVIKKKNPILQIRITPKAIHNEDKDGDKIEELVEPEKEIQDPKKFLTPEELESGKLPPEEILSLPMFKSYTAGNPAPVLYIKNLAKDVIVDDFYFIFGSLFGSVEAAKSGLHVKLMQEGRMRGQAFLTFPSIELAHQALNLVNGYVFKGKPMIIQFGRNPAAAKGT 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00331 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 157 IPR000504 GO:0003723
Bva01g00331 532 Gene3D - 10 183 IPR012677 -
Bva01g00331 532 MobiDBLite consensus disorder prediction 156 197 - -
Bva01g00331 532 PANTHER UNCHARACTERIZED 75 530 IPR045164 -
Bva01g00331 532 SUPERFAMILY RNA-binding domain, RBD 81 526 IPR035979 GO:0003676
Bva01g00331 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 445 517 IPR000504 GO:0003723
Bva01g00331 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 150 IPR000504 GO:0003723
Bva01g00331 532 Gene3D - 438 531 IPR012677 -
Bva01g00331 532 MobiDBLite consensus disorder prediction 13 36 - -
Bva01g00331 532 MobiDBLite consensus disorder prediction 156 183 - -
Bva01g00331 532 CDD RRM1_RBM40_like 84 155 IPR034147 GO:0005515
Bva01g00331 532 SUPERFAMILY Formin homology 2 domain (FH2 domain) 280 290 - -
Bva01g00331 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 443 525 IPR000504 GO:0003723
Bva01g00331 532 MobiDBLite consensus disorder prediction 266 335 - -
Bva01g00331 532 SMART rrm1_1 84 153 IPR000504 GO:0003723
Bva01g00331 532 SMART rrm1_1 444 521 IPR000504 GO:0003723
Bva01g00331 532 CDD RRM2_RBM40_like 444 523 - -
Bva01g00331 532 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 75 530 - -
Bva01g00331 532 MobiDBLite consensus disorder prediction 266 293 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00331 445 521 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 2.24e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00331 K13157 - gmx:100814307 628.632