LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva01g00321	ATGGCTAGAAGAGATACTAGTGTGGTCTTATACATATTCTTACTTCACATTTTCTTGAGCTTTGTGATAAGCCTATCAGCCCCAGAGAGTGCTCTTATAACACAGCTTCCTGGTTTTAATGGCGCTTTTCCTTCCAAGCACTATGCTGGGTATGTGACAATTGATGAAAGTCATGGAAGGAATTTGTACTACTATTTTGTTGAATCAGAAAGCAAACCGTCTCAGGATCCAGTGGTTCTATGGCTCAATGGTGGACCCGGGTGCTCTAGTTTCGATGGCTTCGTATACGAGCATGGCCCATTTAATTTTGCAGCAGCAAAGACTAAGGGTGGCCTTCCCAAATTGCAACTCAATCCCTACAGCTGGTCGAAGGCTTCCAACATCATTTACTTGGATTCTCCTGCTGGTGTgggattttctttctcaaacaATCAATCTGATTACATAACTGGAGACTTAAAGACTGCTGCTGATACACACGACTTTCTCCTCAAGTGGTTTGAACTATACCCGGAGTTCCTTTCCAACCCATTCTTCATTGCTGGAGAGTCATATGCTGGAGTTTATGTGCCTACTCTTGCTTATGAAGTGATGAAAGGAATTGATTCTGGTGTGAAACCCCATCTGAATTTCAAGGGTTACATGGTAGGAAATGGTGTTACAGATAACAAATTTGATGGCAATGCTCTTGTTCCGTTTGCACATGGAATGGGTCTTATCTCAGATGATCTGTATGAGGAGGTAGTAAAAGAGTGCAATGGGAATTTCTATGATCCTGACCCAACCAAAGATATTTGCAGGGAAAAGCTTGCAAAAGTTGATGAGGTCATAGGTGGGTTAAACATTTATGACATACTAGAACCGTGTTATTACGGCACAGTGACCAAGGATACTAAAACATCCAATCCTAGGTTGCCGGCTAGCTTCCGGATGCTAGGTGAGACCGAGAGACCTCTTCCTGTGAGAAAAAGGATGTTTGGTCGTGCTTGGCCTCTGAGGGCTCCAGTGAGAGATGGAATTGTACCTACTTGGCCACAACTTAGCAGCAGTGGCGACGTTCCTTGTACTGATGATGAAGTTGCTACCACATGGTTGAACAATGCAGAAGTGAGGAAAGCAATTCACGCTACAGAGGTTAATCTGATCAAAACTTGGGAGCTATGTACTGGTAGAATTCAATATGACCATGATGCTGGTAGCATGATCCCATACCACCAGAACCTAACTTCCAAAGGGTATCGAGCACTAATTTTCAGTGGCGATCATGATATGTGTGTTCCGTTCACCGGGAGTGAGGCGTGGACGCGATCAATGGGATACAAGATCATTGATGAATGGAGGCCCTGGCTTTCCGATGAACAAGTTGCTGGATTTACACAAGGATATGAGAATAATCTTACGTTTCTGACAATAAAGGGAGCTGGACATACTGTTCCTGAATATAAACCTAGAGAGGCATTGAATTTCTTTCAACGCTTCTTGGCTGgaaaatcaatttg	1499	0.427	MARRDTSVVLYIFLLHIFLSFVISLSAPESALITQLPGFNGAFPSKHYAGYVTIDESHGRNLYYYFVESESKPSQDPVVLWLNGGPGCSSFDGFVYEHGPFNFAAAKTKGGLPKLQLNPYSWSKASNIIYLDSPAGVGFSFSNNQSDYITGDLKTAADTHDFLLKWFELYPEFLSNPFFIAGESYAGVYVPTLAYEVMKGIDSGVKPHLNFKGYMVGNGVTDNKFDGNALVPFAHGMGLISDDLYEEVVKECNGNFYDPDPTKDICREKLAKVDEVIGGLNIYDILEPCYYGTVTKDTKTSNPRLPASFRMLGETERPLPVRKRMFGRAWPLRAPVRDGIVPTWPQLSSSGDVPCTDDEVATTWLNNAEVRKAIHATEVNLIKTWELCTGRIQYDHDAGSMIPYHQNLTSKGYRALIFSGDHDMCVPFTGSEAWTRSMGYKIIDEWRPWLSDEQVAGFTQGYENNLTFLTIKGAGHTVPEYKPREALNFFQRFLAGKSI	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva01g00321	499	Pfam	Serine carboxypeptidase	37	495	IPR001563	GO:0004185\|GO:0006508
	Bva01g00321	499	ProSitePatterns	Serine carboxypeptidases, serine active site.	180	187	IPR018202	GO:0004185
	Bva01g00321	499	Gene3D	-	355	393	-	-
	Bva01g00321	499	Gene3D	-	401	496	-	-
	Bva01g00321	499	PRINTS	Carboxypeptidase C serine protease (S10) family signature	466	479	IPR001563	GO:0004185\|GO:0006508
	Bva01g00321	499	PRINTS	Carboxypeptidase C serine protease (S10) family signature	118	130	IPR001563	GO:0004185\|GO:0006508
	Bva01g00321	499	PRINTS	Carboxypeptidase C serine protease (S10) family signature	166	191	IPR001563	GO:0004185\|GO:0006508
	Bva01g00321	499	PRINTS	Carboxypeptidase C serine protease (S10) family signature	131	141	IPR001563	GO:0004185\|GO:0006508
	Bva01g00321	499	ProSitePatterns	Serine carboxypeptidases, histidine active site.	466	483	IPR033124	GO:0004185
	Bva01g00321	499	Gene3D	alpha/beta hydrolase	26	319	IPR029058	-
	Bva01g00321	499	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 20	19	498	-	-
	Bva01g00321	499	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	19	498	IPR001563	GO:0004185\|GO:0006508
	Bva01g00321	499	SUPERFAMILY	alpha/beta-Hydrolases	33	497	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva01g00321	Bva-Chr1	2853996	2859018	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva01g00321	360	499	Calmodulin-binding Proteins	AT2G22960	49.286	6.47e-43	149

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva01g00321	K16296		-	fve:101295473	807.364