Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00289 ATGTATGGCAAAACATGCTGTGAGAAGGAAACTAGTGTTCCCCAAGAAAATGAGATTCAAGAAGATAAAGgccagagaaaaagaagatgggTAGGAGTGGGAAAAGGGATTGATATGTTGGAAGAGGAGAAAGAGTTTGATGATGGAAGAATCACTCAAAAGGGTGTTTTGGAGCAATCAATGCACATAAAGAAAACTGAAGGAAATATACTTCAAGACAATGCTTCCATCTGCAAAAGTGGGAAAACAACCACCTTATCTCCTAATAGACCTACATTTTTCAAAGTATTGGTCAATGATTTTTCTACCGGCTTGGAAATCCCTTGGGCTTTTGTCATGAAATACAAATATGTTCCATACGAATCTGTGCTTCTGTTGTATCAAGATAAACAATGGAGGCTTGATGTGGAAATGGTTGGGGAACGTGTTTACTTCAAAGGATTAGAGAGATTTGTTGAAGACAACAGTTTGAAAATTGGGGACTTTCTGATATTCAAATATGTTGAAAATTCAACATTGAAGGTGAAAATGTATGGAAAAGCATTGTGTGAGGAGGAAGTTCAGGTGGTAAAAGATCAGAATTCTGAACCTGTGTTAGGCAAAGAAAGTAGGAGGCAAGAAAatgatcaaagaaaaagaaaagtaattcaTATTGATTCTGATTCATATCAAAATGGCGAGTCGAAGCAATCGATGCTCaaacagagaagaaaactTGTTAGTCAAGAAACTGCATCGAACCATAAGATTCAAAAGAACACTACCTTGCCTCCTCATGCAGCAAGAAAGTTCAATTCTCAGCATCCTTACTTCCAAGTCAAGCTGACAGCGACATATGCCAGCAATGGTTATCTACCTATACCAGctaaaattttcaaggatCATTTAAAGGCAGAAAACCGGGAGATAACGCTTCAAATGTTAGGAAAAAATTGGACTGTGATGATAAGAATCTACGGCAGATCTAGTGATAAGTCTAAGGTGGAAGCCAGAATCAATGGAGGATGGGGGGCATTTGTGAGAGACAATGGTCTTAAAGCTGGAGATATCTGCATCTTTAGAATGATTCGAAGTGATGATATTGTTTTCAAAGTTCATGTGAATAGATGCAATCTGGTAAAAAGTGAGATTGATGGAAGGCCGAAACATTGTAAATCTTCTGACTCTTCTGTTGATGATCAAAATGTAGAATTCAATTCTCCGTATCCTTCTTTCCATGTTCAACTGACGTCTACATATATTAGAACTTATATGATGATCCCtaaggatttttttatcaaatatatgaaGGAAGGTTACCAAAAGATAAAAGTTGAGATGCGGGGCAAATTTTGGACTCTTGAGTGCAATTCAGAAGCCAGAATCACTGGGAGATGGAGGAGATTTGTAAGAGAAAATGGTCTCAAGAAAGGAGATGTGTGTACCTTTATAATGACAAAGAGTGATggcattgaatttgaattcaaacttCACGTTCAAAGACTCTA 1487 0.3477 MYGKTCCEKETSVPQENEIQEDKGQRKRRWVGVGKGIDMLEEEKEFDDGRITQKGVLEQSMHIKKTEGNILQDNASICKSGKTTTLSPNRPTFFKVLVNDFSTGLEIPWAFVMKYKYVPYESVLLLYQDKQWRLDVEMVGERVYFKGLERFVEDNSLKIGDFLIFKYVENSTLKVKMYGKALCEEEVQVVKDQNSEPVLGKESRRQENDQRKRKVIHIDSDSYQNGESKQSMLKQRRKLVSQETASNHKIQKNTTLPPHAARKFNSQHPYFQVKLTATYASNGYLPIPAKIFKDHLKAENREITLQMLGKNWTVMIRIYGRSSDKSKVEARINGGWGAFVRDNGLKAGDICIFRMIRSDDIVFKVHVNRCNLVKSEIDGRPKHCKSSDSSVDDQNVEFNSPYPSFHVQLTSTYIRTYMMIPKDFFIKYMKEGYQKIKVEMRGKFWTLECNSEARITGRWRRFVRENGLKKGDVCTFIMTKSDGIEFEFKLHVQRL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00289 495 CDD B3_DNA 403 492 IPR003340 GO:0003677
Bva01g00289 495 Gene3D - 385 495 IPR015300 -
Bva01g00289 495 Gene3D - 250 371 IPR015300 -
Bva01g00289 495 PANTHER B3 DOMAIN-CONTAINING 382 494 - -
Bva01g00289 495 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 382 494 - -
Bva01g00289 495 MobiDBLite consensus disorder prediction 1 25 - -
Bva01g00289 495 ProSiteProfiles B3 DNA-binding domain profile. 270 371 IPR003340 GO:0003677
Bva01g00289 495 PANTHER B3 DOMAIN-CONTAINING 85 370 - -
Bva01g00289 495 ProSiteProfiles B3 DNA-binding domain profile. 403 494 IPR003340 GO:0003677
Bva01g00289 495 SMART B3_2 270 369 IPR003340 GO:0003677
Bva01g00289 495 SMART B3_2 93 181 IPR003340 GO:0003677
Bva01g00289 495 SMART B3_2 405 494 IPR003340 GO:0003677
Bva01g00289 495 MobiDBLite consensus disorder prediction 239 261 - -
Bva01g00289 495 CDD B3_DNA 269 369 IPR003340 GO:0003677
Bva01g00289 495 Gene3D - 85 183 IPR015300 -
Bva01g00289 495 SUPERFAMILY DNA-binding pseudobarrel domain 86 182 IPR015300 -
Bva01g00289 495 Pfam B3 DNA binding domain 93 177 IPR003340 GO:0003677
Bva01g00289 495 Pfam B3 DNA binding domain 271 367 IPR003340 GO:0003677
Bva01g00289 495 Pfam B3 DNA binding domain 410 488 IPR003340 GO:0003677
Bva01g00289 495 SUPERFAMILY DNA-binding pseudobarrel domain 264 370 IPR015300 -
Bva01g00289 495 ProSiteProfiles B3 DNA-binding domain profile. 90 181 IPR003340 GO:0003677
Bva01g00289 495 CDD B3_DNA 91 178 IPR003340 GO:0003677
Bva01g00289 495 MobiDBLite consensus disorder prediction 239 262 - -
Bva01g00289 495 SUPERFAMILY DNA-binding pseudobarrel domain 400 482 IPR015300 -
Bva01g00289 495 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 85 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00289 Bva-Chr1 2553425 2556444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00289 398 481 B3 DNA Binding Superfamily AT3G18990 31.461 7.93e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva01g00289 B3 1.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00289 - - qlo:115964725 150.984