Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00276 ATGTTAATCCGGAGTTCTTTTCCCATTTCAATTGAGGCTGCTCCATGTTATCTATCTGATCATGGGAAAGATATACTACGTGACAGGATGCATAGTGCTGAAACTTGGCAGGTGTATCAGAAATGCAATGATTACCCTTTTCATTGGTGTGGAAAATCTGAACACATGCAAGATGATAGAAGGAAGGCTGATGATCCTTGTTGCTCAAACATTCCAAGCAGCTTAGGTTGGCCATCGACTGCCAGTACAATGACTGAAAATACTGTTCCCATTATTGTATACAGAAGAAAGAAGCTACGAAAGAACTCAACAGCCCCTCTTTTAAAGCTGGAACCAACAATTGTTCAGAGAAATGCCAATTTCCCTTCAACCATAAGCTCCTCTGGTCATTTATCATCTTCTGAGGATCAGCGAGCTGGTTCCGAAGTTAAGCGTGAAACTGGAACAGTTAAAGATCCTGTTGCACCTGCTGCCTTATATGATAGAGAGCCCTATATTTCCAACCCAAGTTCTAAAAAACGGTGTTTACTTCAGGAAGAGCATGGTGGTGATGGAACAACTAAAAATAACTTGATGAGAAATTTAGGTATTAACAGTATAAATGATAGTTGCtcctcatcaaaatcaaatatgggACATGTTTCAGATTCCATGGAAACTGGAATGAATGAAACTGGTGAATGCTCCTCCTCTAGCATGATAGTTATGGATGTCATTCGGGAAGATCAATCAGAAAAGGATTTCTGCATCAGTATTTTAAGAAGCTATGGTCTTCTAGGAGGAGTTTTTTCTACTGATAATGGGGCCTCTGAAGGAGATGCTGTTACCACTGGCGATAGATGCTGTCGTCGATCATGCAAAATATGTGGTCAGTTTGCTGATTCACTGAAAATGCTTATATGTGATCATTGTGAAGAAGCATACCATCCGTCGTGCTGGCATCCACGTTGGAAAAAAAAGCTATCTGACGATGAGTGGTTTTGTCATTCATGTCTAATAAAGAAGCGAAAAATCCTCACGGAGGCAGTCACCAGAAGTTCACCAGGTATAAACAGTGAAACGGTTGGATGTGCAGCTGCTTCCTCTGTTAAGAGTGAATTGAATCCTATGCTATTGATGTTGAAAGACAATGAGCCATATACTACTGCAGTTCGGATTGGTAAAGGTTTTCAAGCAGAAGTTCCTGAATGGTCAGGTCCAATAAGAAGCGATGTAGATGATGTTGCTGAACCACAAGAGATTGATCATTCAAAGTTTTCCATTTTGAAGgatgaaaatatcaaaatgccAAATAGTCACAGCTCTATCGGTAATTGGATTCAGTGTCGAGAGGTTATTGATAGATCCAAAGGAACTAGATGTGGAAAATGGCGCCGGGCTCCAATCTTTGAAGTCCAAACTGATGAGTGGGAGTGCTTCTGTTCCATCCACTGGGATCCAGCTCATGCTGATTGTGCTGCACCTCAGGAGATAGAAACCAACCAAATTCTAAAGCAACTAAAGTATATAGAACTGTTGAGGCCTCGATTTATGAAGCAGCGAAAATCAGAATGCCCCAAAGCGAAGTG 1568 0.4011 MLIRSSFPISIEAAPCYLSDHGKDILRDRMHSAETWQVYQKCNDYPFHWCGKSEHMQDDRRKADDPCCSNIPSSLGWPSTASTMTENTVPIIVYRRKKLRKNSTAPLLKLEPTIVQRNANFPSTISSSGHLSSSEDQRAGSEVKRETGTVKDPVAPAALYDREPYISNPSSKKRCLLQEEHGGDGTTKNNLMRNLGINSINDSCSSSKSNMGHVSDSMETGMNETGECSSSSMIVMDVIREDQSEKDFCISILRSYGLLGGVFSTDNGASEGDAVTTGDRCCRRSCKICGQFADSLKMLICDHCEEAYHPSCWHPRWKKKLSDDEWFCHSCLIKKRKILTEAVTRSSPGINSETVGCAAASSVKSELNPMLLMLKDNEPYTTAVRIGKGFQAEVPEWSGPIRSDVDDVAEPQEIDHSKFSILKDENIKMPNSHSSIGNWIQCREVIDRSKGTRCGKWRRAPIFEVQTDEWECFCSIHWDPAHADCAAPQEIETNQILKQLKYIELLRPRFMKQRKSECPKAK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00276 522 ProSitePatterns Zinc finger PHD-type signature. 286 331 IPR019786 -
Bva01g00276 522 ProSiteProfiles Zinc finger PHD-type profile. 283 334 IPR019787 -
Bva01g00276 522 Pfam ELM2 domain 384 498 IPR000949 -
Bva01g00276 522 SMART PHD_3 285 332 IPR001965 -
Bva01g00276 522 MobiDBLite consensus disorder prediction 121 150 - -
Bva01g00276 522 MobiDBLite consensus disorder prediction 121 136 - -
Bva01g00276 522 PANTHER HISTONE ACETYLTRANSFERASE 31 515 - -
Bva01g00276 522 SUPERFAMILY FYVE/PHD zinc finger 284 338 IPR011011 -
Bva01g00276 522 ProSiteProfiles Zinc finger CW-type profile. 433 493 IPR011124 GO:0008270
Bva01g00276 522 Gene3D - 437 502 - -
Bva01g00276 522 Gene3D - 197 334 - -
Bva01g00276 522 Pfam PHD-finger 286 332 IPR019787 -
Bva01g00276 522 PANTHER REMODELING AND SPACING FACTOR 1 31 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00276 Bva-Chr1 2262269 2272360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00276 286 336 C2H2 Transcription Factor Family AT3G01460 41.176 1.03e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva01g00276 ELM2 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00276 - - aprc:113864532 594.734