Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00201 ATGGtTCCAAGAGGGTTCCAGCAGGACATTGAGGTAGCCCTTATGGGAGATGATGGTAAGCATGTTGCTTTTGGAAGGAAACCACAAGCAGCAATCACTGCAAGGAGACCAGATTCTGGGGGTAAAGAAGGTTCCAAGATCTCTCTCCTTGCCAACCATTTTCTAGTGAAATTTGATTCATCACAGAAGATATACCATTACAATGTTGAAATTACTCCTAATCCATCCAAGGAAGTTGCCCGAGTAATTAAACAGAAATTGGTTGATAACAATTCTGCTGTGCTCTCTGGTGCACAGCCAGCATATGATGGGCGAAAGAATCTTTACAGCCCTGTTGAATTCCAAAATGATAAGCTAGAGTTCTACATAAGCCTCCCAATCCCCAGTAGCAAGTTGACATTACCTTATGGAGAAATGTATGACTTGCAAGAGAAGCATGAACGCCTTAAACTGTTCCGAGTAAATATCAAACttgtttctaaaattaatgGGAAGGACTTGACTAACTACTTGAGCAAAGAGGGAGATGACTGGGTTCCACTTCCACAGGATTATCTACATGCATTAGATGTAGTTTTAAGGGAAAGCCCAACAGAGAAGTGTTTACCTGTAGGGAGATCAATCTATTCAAGTTCAATGGGAGGAACCAAAGAGATTGGGGGAGGAGCTGTTGGAATGAGAGGGTTCTTTCAGAGTCTTCGACCAACCCAACAAGGACTTGCCCTCAATGTGGATTTCTCTGTAACTGCTTTCCATGAAAGCATAGGAGTAATTCCGTACTTGCAGAAGCGTCTTGAATTCCTTCGAGATCTTCCTCAAAGGAAGACTAGAAGTTTAACCTgtgaagaaaggaaggaagtCGAGAAGGCATTGAAGAGCATCAGGGTCTTTGTTTGCCATAGAGAAACTGTACAGAGATACTGTGTTTATGGCTTAACTGAGGAAGCTACTGAAAATCTTTGGTTTCCTGACAAGGATGGAAAGAATCTGAGGCTCATGAGTTACTTCAAAGATCACTATAACTATGACATACAGTTCAAAAAGTTGCCATGCTTGCAAATTAGTAGGAGTAAACCATGCTATCTCCCTATGGAACTTTGTGTGATCTGTGAAGGCCAGAAATTCCTTGGCAAACTTTCTGATGATCAGACAGCAAGAATACTCAAGATGGGTTGCCAAAGACCAAGAGAACGAAAAGCCATCATAGATGAAGTAATGAGAGGACCTGTTGGACCAACCAGTGGTACCCAGGAAAGAGAATTTAAACTCCAAGTTTCAAGAGAAATGACACGGTTGACTGGTAGAATACTTTACCCTCCTAAGCTAAAGCTTGGAGAAGGAGGTCATGTGAGACGTTTGATTCCTTCACGTCATGATCGCCAATGGAATCTTCTGGATGGACATGTCTATGAAGGAACCAAAATTGAAAGGTGGATACTGATAAGTTTTGGTGGGACACCAGAGCAGAAATCGAACATCCCCAAATTCATAAGCCAGCTATGCCAAAGGTGTGAACAGTTGGgcatttttcttaacaaaaatacTGTTATTAGCCCCCAATTCGAATCAACACAAGTGCTTAATAATGTCAACCTTTTGGAATCTAAGCTCAAGAAAATGCAGAGAGCTGCTTCAAACAATCTTCAGCTGCTTATTTGTATTATGGAGAGAAAACACAAAGGATATGCGGATTTGAAACGAATTGCAGAGACAAGTGTTGGGGTGGTAAGTCAATGCTGCTTGTACCCCAATCTCAGCAAGTTGAGTTCTCAATTTTTGGCTAATTTGGCCCTCAAGATCAATGCCAAGGTTGGAGGGTGCACAGTTGCTCTGTACAATTCGCTGCCTTCTCAAATACCACGCCTCTTTCAACCTGATGAGCCAGTGATGTTTATGGGTGCTGATGTAACACATCCTCATCCACTTGATGACTTCAGTCCATCTGTTGCTGCTGTAGTTGGTAGCATGAATTGGCCAACAGCAAACAAATATATCTCAAGAATAAGGTCCCAAACACATCGACAAGAAATCATCCAGGATCTTGCTGCAATGGTAGGGGAATTACTTGATGATTTTTATCAGGAAGTAAAGAGACTCCCTagaagaataattttcttcAGAGATGGGGTTAGTGAAACCCAATTTTATAAAGTGCTGCAAGAAGAACTTCAATCCATCAGAGGGGCATGTTCCAGATTTCCTGCTTATAAACCTTCCATTACTTTTGCAGTTGTACAGAAGAGGCATCATACAAGGCTGTTTTCATTTGAAACTGATCACTCATCCACTCAAAACCAATTTTTTGATGGGAATATTCCCCCAGGTACTGTGGTTGATTCAGTGATTACTCATCCTaaagaatttgatttctatCTCTGTAGCCACTGGAGTATGAAAGGAACAAGCAGGCCAACTCATTACCATGTTTTGTGGGACGAAAATCAATTCACTTCTGATGAACTCCAGAAACTTGTTTACAATCTTTGCTATACTTTTGTTAGGTGCACCAAGCCAATTTCTTTGGTTCCTCCAGTTTACTATGCCCATTTAGCTGCTTACCGAGGCAGACTCTACCTCGAGCGATCGGAGTCCTCAGCTTTGTTCAGAAATACAACTACATTATCTAGAGCTGCCCCTCCAAAGACAGCACCTCTACCAAAACTTAGCGAGAACATCAAGAAGCTCATGTTCTACTGCTA 2699 0.4072 MVPRGFQQDIEVALMGDDGKHVAFGRKPQAAITARRPDSGGKEGSKISLLANHFLVKFDSSQKIYHYNVEITPNPSKEVARVIKQKLVDNNSAVLSGAQPAYDGRKNLYSPVEFQNDKLEFYISLPIPSSKLTLPYGEMYDLQEKHERLKLFRVNIKLVSKINGKDLTNYLSKEGDDWVPLPQDYLHALDVVLRESPTEKCLPVGRSIYSSSMGGTKEIGGGAVGMRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLPQRKTRSLTCEERKEVEKALKSIRVFVCHRETVQRYCVYGLTEEATENLWFPDKDGKNLRLMSYFKDHYNYDIQFKKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPRERKAIIDEVMRGPVGPTSGTQEREFKLQVSREMTRLTGRILYPPKLKLGEGGHVRRLIPSRHDRQWNLLDGHVYEGTKIERWILISFGGTPEQKSNIPKFISQLCQRCEQLGIFLNKNTVISPQFESTQVLNNVNLLESKLKKMQRAASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFQPDEPVMFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLAAMVGELLDDFYQEVKRLPRRIIFFRDGVSETQFYKVLQEELQSIRGACSRFPAYKPSITFAVVQKRHHTRLFSFETDHSSTQNQFFDGNIPPGTVVDSVITHPKEFDFYLCSHWSMKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPVYYAHLAAYRGRLYLERSESSALFRNTTTLSRAAPPKTAPLPKLSENIKKLMFYC 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00201 899 PANTHER PROTEIN ARGONAUTE 7 27 898 - -
Bva01g00201 899 SMART DUF1785_2 202 254 IPR014811 -
Bva01g00201 899 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 27 898 - -
Bva01g00201 899 SUPERFAMILY PAZ domain 249 407 IPR036085 GO:0005515
Bva01g00201 899 Pfam PAZ domain 265 387 IPR003100 GO:0005515
Bva01g00201 899 Gene3D paz domain 248 375 - -
Bva01g00201 899 SUPERFAMILY Ribonuclease H-like 535 860 IPR012337 -
Bva01g00201 899 SMART PAZ_2_a_3 262 402 IPR003100 GO:0005515
Bva01g00201 899 Pfam Argonaute linker 1 domain 203 252 IPR014811 -
Bva01g00201 899 SMART Piwi_a_2 550 860 IPR003165 GO:0003676
Bva01g00201 899 Pfam N-terminal domain of argonaute 46 193 IPR032474 -
Bva01g00201 899 ProSiteProfiles Piwi domain profile. 550 860 IPR003165 GO:0003676
Bva01g00201 899 CDD Piwi_ago-like 419 859 IPR045246 -
Bva01g00201 899 Gene3D - 436 612 - -
Bva01g00201 899 Gene3D - 623 899 IPR036397 GO:0003676
Bva01g00201 899 Pfam Piwi domain 551 857 IPR003165 GO:0003676
Bva01g00201 899 ProSiteProfiles PAZ domain profile. 262 371 IPR003100 GO:0005515
Bva01g00201 899 CDD PAZ_argonaute_like 258 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00201 Bva-Chr1 1627749 1633019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00201 41 899 Eukaryotic Initiation Factors Gene Family AT1G48410 41.472 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00201 K11593 - gmx:100797755 1602.42