Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00180 ATGCTCTGTTTCGAGGAAATGTACATGGTGTTGCAGAGGATTAAAACCCTCATCGAAGAGTGCTCCAACGGAAGCAGCAAGATGTGGCTGCTGATGCAAAGCGACAGAGTTGCAGACAGTTTCCATAAACTCACCGCAGATTTGTCGACGGTTCTGGATATCTTGCCGCTCAAAGAACTCGACCTGAACGACGACGTTCAGGAACTCGTGTTGCTCATCAGAAAACAATGCTCTGAATCGAAGCCCTTCGCCGATCCCAGAGATAGCGAGCTGAAGCGGGAGGTGATAACCATGCTTGATCGGATTAAGAGAGAGATTGTTCCAGAACCTTCTAAGCTCTCGGAGATTTTCGATGGTTTGGAAATTCGAGATTCTTCCAGTTGCAGAGCCGAAATTGAGAGCTTGGAAGAGGAAATTCAGAACAGAAACGACGAGCAATCCAAATCGGAGATTGTTGCTTTGATCGGACTCGTGAGATACACCAAATGCGTTCTCTTCGGAGCATCAACGCCGTTGCCAAGCACCGAGACCCAGCAGCAGAAACAACCATCGGAGATTGTTATTCCGGCTGATTTCCGGTGTCCGATAACTCTAGAGCTCGTGCGGGACCCAGTCGTCGTGGCAACAGGTCAGACGTACGATCGGGAGTCAATTAAAATGTGGATTGAATCTGGTCATAACACGTGTCCTAAGACAGGTCAGACCCTGGCCCACACGGACCTCATTCCTAATCGCTCGTTGAAGAATCTAATCGCCATGTGGTGTCGGGAGCAGAAAATCCCGTTTGAAACAACGAGTGGGAACGAGAAAGTTAGCGGCGTTATAACGAACAGGGCAGCGTTGGAGGCTACTAGGATGACGGCGTCGTTTCTGGTCAACAAGTTGTCTATTTCACCGACGATGGACGCTGCAAACGGCGTCGTATATGAGCTGCGTGGGCTGGCGAAAACGGACTCCGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCTATCCCTGTTCTAGTTCGTTATCTCAGCTCCGACATTGGCTCACACAACCCGGATCTCCAGGTTAACGCCGTCACCACGATTCTCAACCTCTCCATCCTCGAAGCGAACAAAACGAGGATAATGGAGACTGATGGAGCTTTAAATGGCGTCGTCGAGGTGCTGCGTTCTGGTGCCAAGTGGGAAGCCAAAGCGAACGCGGCGGCTACTATATTCAGCTTATCGGATGTGCACTCGTACAGAAAAAGGCTAGGGAGAAAGACACGTGTTATAAAAGGGTTGATCGACTTGGCAAGAAGTGGGCCCAAAAGTGCCAAGAGGGACGCATTAGCGGCGATTTTGAATCTAGCGGGAGACAGAGAGACGGTGGCGAGGTTGGTGGAAGGTGGGGTGGTGGAGATGACGGTGGAAGGGATGGACAGTTTGCCGGAGGAGTCGGTGACGATCCTCGAGGTGGTCGTAAAGAGAGGCGGATTACTGGCCATCGCCGCCGCCTACGGCAGCATCAAGAAATTGGGCGTAATTTTAAGAGAAGGTTCCGATAGAAGTAGAGAAAGCGCGGCGGCGACTCTTGTTACAATGTGCCGGAAAGGGGGATCGGATATAGTGGCGGAGTTGGCATGTATTATCGGAATTGAAAGAATCGCATGGGAATTAATGGCAACTGGAACAGTGAGAGGCAGAAGAAAAGCAGCGACCTTGTTGCGAATTCTCCGGCGATGGGCGGCGGGTTTAGAAAGTGGGTTAACAGAAAGGTTGACAACTACCATGAGTTCGGCAACAACTATGCTTCCAGCTCAGTA 1790 0.5106 MLCFEEMYMVLQRIKTLIEECSNGSSKMWLLMQSDRVADSFHKLTADLSTVLDILPLKELDLNDDVQELVLLIRKQCSESKPFADPRDSELKREVITMLDRIKREIVPEPSKLSEIFDGLEIRDSSSCRAEIESLEEEIQNRNDEQSKSEIVALIGLVRYTKCVLFGASTPLPSTETQQQKQPSEIVIPADFRCPITLELVRDPVVVATGQTYDRESIKMWIESGHNTCPKTGQTLAHTDLIPNRSLKNLIAMWCREQKIPFETTSGNEKVSGVITNRAALEATRMTASFLVNKLSISPTMDAANGVVYELRGLAKTDSDSRACIAEAGAIPVLVRYLSSDIGSHNPDLQVNAVTTILNLSILEANKTRIMETDGALNGVVEVLRSGAKWEAKANAAATIFSLSDVHSYRKRLGRKTRVIKGLIDLARSGPKSAKRDALAAILNLAGDRETVARLVEGGVVEMTVEGMDSLPEESVTILEVVVKRGGLLAIAAAYGSIKKLGVILREGSDRSRESAAATLVTMCRKGGSDIVAELACIIGIERIAWELMATGTVRGRRKAATLLRILRRWAAGLESGLTERLTTTMSSATTMLPAQ 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00180 596 SUPERFAMILY ARM repeat 291 567 IPR016024 -
Bva01g00180 596 Coils Coil 125 152 - -
Bva01g00180 596 ProSiteProfiles U-box domain profile. 187 261 IPR003613 GO:0004842|GO:0016567
Bva01g00180 596 SMART arm_5 318 362 IPR000225 GO:0005515
Bva01g00180 596 SMART arm_5 407 447 IPR000225 GO:0005515
Bva01g00180 596 PANTHER U BOX DOMAIN-CONTAINING 1 581 - -
Bva01g00180 596 SMART Ubox_2 191 254 IPR003613 GO:0004842|GO:0016567
Bva01g00180 596 Gene3D - 277 591 IPR011989 -
Bva01g00180 596 CDD RING-Ubox_PUB 192 234 IPR045210 -
Bva01g00180 596 SUPERFAMILY RING/U-box 182 261 - -
Bva01g00180 596 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 375 IPR000225 GO:0005515
Bva01g00180 596 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 1 581 - -
Bva01g00180 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 266 IPR013083 -
Bva01g00180 596 Pfam Armadillo/beta-catenin-like repeat 319 361 IPR000225 GO:0005515
Bva01g00180 596 Pfam U-box domain 188 259 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00180 Bva-Chr1 1465413 1467777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00180 2 573 U-box Gene Family AT5G01830 61.672 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00180 - - tcc:18602242 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00180 01 1465413 1467777 Bva01g00180 01 1465413 1467777 ECH