Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00138 aTGGCTTCTCCAGCACccaatttaaattcaaacccACAATCCTTCTCTTCTCCATTCATGGCGACCACCTCTTTCGCTGATCTTCTCTCCAACAATAACTTAACCATGGATCATAACAGCTGGGGAAGTGCTGTTtctgaatttaaaaatgacgACAGAGTTGGAAATGAAATTCCAAAATTCGCTTCACTGCCCTTGTCTCCTCCCCCAATTTccccttctttttatttgggtTTCTCTTCTGGTTCAAGCCCAACTGATTTCTTAAGTTCGTCCacgtttctttcttctccaaatATTCTTGCATCTCCCACTACTGAGGCGTTTGCTGGTCAGAGCTTTGACTGGATTAACAACAGTTCTAGTGAGAATCAAGAACGTAATCAGAAGGAAGAGACAAATTACTCTGAATTATCTTTTCAAAGCCAAACAAAGCCTGAATCTTCATCATCCTTTTTTCAATCTTCTTCAAGCATGTTTCAACAAGCGCAGGAACCTCAAAAGGATCAAGATACATGGAAATTTAACAATCCCCCAAAGGAGACTGATTTTTCATTAGAGAGGGTGGCAACAAAATCTGAATATTCATCAGCTCCGGGCTTCTCCTCCGAAATGACTGCAAACAAATCAACAGCGCTAACTCACTCAGCTCCTGTTTCTTGTTATTTCAACAGCACTAATTCATCCCAGTCTATCAGAGAGCAAAAGAGATCCGAAGACGGGTACAATTGGAGAAAATATGGACAGAAACAAGTGAAAGGAAGCGAAAATCCACGCAGTTATTACAAATGCACACATGCTAATTGTTCCATGAAGAAGAAGGTTGAGAGGTCTTTGGTGGATGGGCAAATTACTGAGATAGTATATAAGGGAAGTCATAACCATCCCAAGCCTCAGTCTAATAGGAGAACAAGTTCTCAATCAATTCAACCTTCTTCTTCGTGCACCAACTCGGGGATTTCTGATCAAATGGAGCCTGTTTCAATGCATGAAGATTCTTCGGGCTCTTTTGGAGATGATGACTTTGAGCAAACATCTCAAACCAGTTATTCGGGCGATGACGATGAGTTTGGACTGGATGCTAAAAGATGGAAAGGAGATGATGGAAATGATGGTTATTCCATCTCTGGGAATAGAACTGTCAAGGAACCGAGAGTTGTAGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGCTATAGGTGGAGGAAATATGGACAAAAAGTAGTTAAAGGGAATCCAAACCCAAGGAGCTACTACAAATGCACATCCCCAGGTTGTTCAGTGAGAAAACATGTGGAGCGAGCTGCACATGATCTGAAAGCTGTGATCACAACCTATGAAGGGAAACACAACCATGATGTTCCGGCAGCGCGTGGCAGCGGAGGTTATAACCTAAACAGAACCTCAATGAACAACAACGTTAGCAATGCACCTGCACCTATTAGGCCCTCTGCAGTAAACAGTTATTCCAACTCAGCAAGCTTCACAAACTCACTTTACAATACAAGACCACCAACTTCTCAAAGTCAAGAACCATTTTTACTTGACAGGCAGCAGAGCACTGGACAATTTGGATATTCACCTTTTGGAAGATCATTTACCAATCAAGCACAATTATCTGACGGTGTATATTCTAAGGCCAACGATGAATCATTTCTTCAGTCATTTATGTCCAAGGACTTCTA 1691 0.398 MASPAPNLNSNPQSFSSPFMATTSFADLLSNNNLTMDHNSWGSAVSEFKNDDRVGNEIPKFASLPLSPPPISPSFYLGFSSGSSPTDFLSSSTFLSSPNILASPTTEAFAGQSFDWINNSSSENQERNQKEETNYSELSFQSQTKPESSSSFFQSSSSMFQQAEPQKDQDTWKFNNPPKETDFSLERVATKSEYSSAPGFSSEMTANKSTALTHSAPVSCYFNSTNSSQSIREQKRSEDGYNWRKYGQKQVKGSENPRSYYKCTHANCSMKKKVERSLVDGQITEIVYKGSHNHPKPQSNRRTSSQSIQPSSSCTNSGISDQMEPVSMHEDSSGSFGDDDFEQTSQTSYSGDDDEFGLDAKRWKGDDGNDGYSISGNRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCSVRKHVERAAHDLKAVITTYEGKHNHDVPAARGSGGYNLNRTSMNNNVSNAPAPIRPSAVNSYSNSASFTNSLYNTRPPTSQSQEPFLLDRQQSTGQFGYSPFGRSFTNQAQLSDGVYSKANDESFLQSFMSKDF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00138 562 Pfam WRKY DNA -binding domain 397 453 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 Pfam WRKY DNA -binding domain 238 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 MobiDBLite consensus disorder prediction 288 377 - -
Bva01g00138 562 MobiDBLite consensus disorder prediction 354 368 - -
Bva01g00138 562 MobiDBLite consensus disorder prediction 338 352 - -
Bva01g00138 562 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 559 IPR044810 GO:0003700
Bva01g00138 562 SUPERFAMILY WRKY DNA-binding domain 388 456 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 MobiDBLite consensus disorder prediction 118 175 - -
Bva01g00138 562 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 53 559 - -
Bva01g00138 562 ProSiteProfiles WRKY domain profile. 232 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 Gene3D WRKY domain 383 449 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 MobiDBLite consensus disorder prediction 293 329 - -
Bva01g00138 562 MobiDBLite consensus disorder prediction 134 175 - -
Bva01g00138 562 SMART WRKY_cls 396 455 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 SMART WRKY_cls 237 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 Gene3D WRKY domain 222 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 SUPERFAMILY WRKY DNA-binding domain 233 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva01g00138 562 ProSiteProfiles WRKY domain profile. 391 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00138 Bva-Chr1 1043432 1046747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00138 232 558 WRKY Transcription Factor Family AT2G38470 53.740 7.62e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva01g00138 WRKY 2.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00138 K13424 - gmx:100776837 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00138 01 1043432 1046747 Bva02g00442 02 5951866 5954650 BWGD
Bva01g00138 01 1043432 1046747 Bva01g00138 01 1043432 1046747 ECH