Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00088 ATGGCTGCAGCATACGAAGAGCACCTTCCTGCAGTTCCTGATTGGCTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACCCTTGTGGGTCTCCAAAGCATGCCAGGGCTTGTGATTTTATATGCCAGCATAGTCAAGAAGAAATGGGCTGTGAACTCTGCTTTTATGGCTCTCTATGCATTTGCTGCAGTCCTCATCTGTTGGGTTCTTTTGTGTTACCGTATGGCCTTCGGAGACAAACTCCTCCCATTCTGGGGCAAGGGCGCACCAGCTCTAGGCCAAAAGTTTCTTATAGAGCAAGCTGAGATACCTGAAAGCATCCACTCGTACAACAATGGCACTGTAGAAAGCCCACCCGAACGGCCCCTTATTCCCATGACTACCGTTGTCTACTTCCAATTCACTTTCGCTGCAATTACCATGATTTTATTAGCTGGGTCTGTGCTCGGAAGAATGAACATCAAGGCATGGATGGCTTTTGTCCCTCTTTGGCTCATTTTCTCATACACCGTGGGTGCATTCAGCCTATGGGGTGGTGGGTTTCTTTATCAATGGGGCGTCATAGATTACTCCGGCGGCTATGTCATCCACCTCTCGTCTGGCATCGGCGGCTTCACTGCCGCCTACTGGGTTGGGCCGAGGCTGAAGAGTGACAGGGAGAGGTTCCCACCGAACAACGTGCTGCTGATGCTTGCGGGTGCTGGGTTGCTATGGATGGGGTGGTCAGGGTTCAATGGCGGAGCACCATATGCAGCTAACCTTACTTCTTCAGTTGCTGTGTTGAATACAAATATATGCGCAGCCACCAGCTTGCTTGTGTGGACATGTCTCGATGTTATCTTCTTCGGCAAGCCCTCCGTCATCGGAGCTGTTCAGGGTATGATGACCGGACTGGTTTGCATCACCCCCGGAGCAGGATTAGTACAATCGTGGGCGGCAATAGTGATGGGAATACTATCAGGCAGCATTCCATGGGTCTCTATGATGATTCTTCACAAGAAATTAACTTTGCTCCAAAAGGTGGATGATACCTTAGGTGTATTTCACACACATGCAGTGGCTGGCCTTTTGGGTGGTCTCCTCACTGGTCTGTTTGCAGAACCAGCCCTCTGCAGACTCATATTACCAGTGAGCAACACAAGGGGAGCATTCTACGGAGGAAGTGGTGGTGTTCTGTTCTTGAAGCAGCTAGTGGCTGCCCTATTTGTAATTGGATGGAACTTAGTCTCTACCACACTCATTCTTCTTGCCATACAATTGTTTATACCGCTAAGAATGCCGGAGGAGCAGTTGGTTATCGGAGACGACGCCATCCACGGCGAAGAGGCTTATGCTCTTTGGGGTGatggagaaaaatatgatCCAACAAAGCATGGAGCTTCATTGTTTGGAGAAAAACCTGCCATATCGCCTTATGTTAGCGGTGCCAGAGGTGTTACTGTAaacttata 1457 0.4894 MAAAYEEHLPAVPDWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGDKLLPFWGKGAPALGQKFLIEQAEIPESIHSYNNGTVESPPERPLIPMTTVVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIGGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANLTSSVAVLNTNICAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKLTLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPALCRLILPVSNTRGAFYGGSGGVLFLKQLVAALFVIGWNLVSTTLILLAIQLFIPLRMPEEQLVIGDDAIHGEEAYALWGDGEKYDPTKHGASLFGEKPAISPYVSGARGVTVNL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00088 485 ProSitePatterns Ammonium transporters signature. 191 216 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bva01g00088 485 Gene3D Ammonium transporter AmtB like domains 2 449 IPR029020 -
Bva01g00088 485 PANTHER AMMONIUM TRANSPORTER 3 482 - -
Bva01g00088 485 Pfam Ammonium Transporter Family 22 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bva01g00088 485 PRINTS Rhesus blood group protein signature 261 283 IPR002229 GO:0005887
Bva01g00088 485 PRINTS Rhesus blood group protein signature 230 248 IPR002229 GO:0005887
Bva01g00088 485 PRINTS Rhesus blood group protein signature 316 334 IPR002229 GO:0005887
Bva01g00088 485 PRINTS Rhesus blood group protein signature 135 151 IPR002229 GO:0005887
Bva01g00088 485 PANTHER AMMONIUM TRANSPORTER MEP2 3 482 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bva01g00088 485 SUPERFAMILY Ammonium transporter 15 428 - -
Bva01g00088 485 TIGRFAM amt: ammonium transporter 20 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00088 Bva-Chr1 701579 707392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00088 128 485 Inorganic Solute Cotransporters AT2G38290 77.994 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00088 K03320 - gmx:100790119 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00088 01 701579 707392 Bva01g00088 01 701579 707392 ECH