Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00077 ATGGAGAGAAAACAAACCAAAGGGAGGCAAAAAGTTGAGTTGAAAAAGatagagaaggaagaaagtcTTCATTCCACCTTTTCCAAACGAAAAAGTGGCATTTACAAACAGGCTAATGAGCTGGTTACTTCTTGTGGTGCTGAGGTAGGTGCCTTAATATTCTCTCCTGCTGGGAAAGTCTTTTCGTATGCAGTCCCTTCTGTTGAATCAGTAACCAATCGAGTTATGAATATGAATCAAAATCCACCACAAGCCTTGATGGGCTGCCCAGGAAAGGTAATGAATGAGCTGCATACAAAGAACAATGAAATGGTTGTTCAACTCTCTGCTGATAAAGAACGGGCAAAGCAATTAGAACAAATGACAAAGATGCAGAGTCATGGCCAAGCTTGGTGGGAAACTTCTCTGGTGGAACTTGACTATGAAGAACCCAGAAAAAGGGACGCAATCTTTTTGTCTCTTCATAGTGCTGCCCTTGATATGCCTAAGGGGAAGACTTctgctgcttcttcttcagctGCAGCCAATTTTACCGATACAATGGATACTGGTCGCAGTGGAAAAGCCATTCATCCCTTAAACTGCTTTTGTGTTAGTCATATTTACTA 608 0.3898 MERKQTKGRQKVELKKIEKEESLHSTFSKRKSGIYKQANELVTSCGAEVGALIFSPAGKVFSYAVPSVESVTNRVMNMNQNPPQALMGCPGKVMNELHTKNNEMVVQLSADKERAKQLEQMTKMQSHGQAWWETSLVELDYEEPRKRDAIFLSLHSAALDMPKGKTSAASSSAAANFTDTMDTGRSGKAIHPLNCFCVSHIY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00077 202 PANTHER BOX PROTEIN, PUTATIVE-RELATED 6 175 - -
Bva01g00077 202 PANTHER MADS BOX PROTEIN 6 175 - -
Bva01g00077 202 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Bva01g00077 202 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Bva01g00077 202 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Bva01g00077 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Bva01g00077 202 SUPERFAMILY SRF-like 8 81 IPR036879 GO:0003677|GO:0046983
Bva01g00077 202 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Bva01g00077 202 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Bva01g00077 202 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00077 Bva-Chr1 604004 604677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00077 4 139 Type I MADS-box Gene Family AT5G60440 38.028 3.14e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva01g00077 SRF-TF 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00077 - K12412 zju:107413360 160.614