LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva01g00070	ATGAAGAAGCTAAGATTTAATTTCGAGGGCTTGCCCTATCGTCGACGAGGTAGGAAAAATGCATCAAAATCATTCAATCTAGGAATGAAGATGGGATCAGGTGGGCTTCTAACAATTGGTAAATCACTGAAATCTGGAGTCACCAGAGCAGTGTTCCCAGAAGATCTTAAGGTAGCtgataaaacaatttttgatCCTCAGGATAGGACCCTTTCGATATGGTATAAGGCTTTTGAGCTGCTATGTATTGCTTCAATCTCTTGTGATCCTTTGTTCTTTTATCTCCCTATCTTTAATAAGTCCTATTGCATGGGGATAGACTCAGGTCTAGCATATACTGCTGTTACACTGAGAACTGTATTGGATTCTTTCTATCTTCTACGTATAGCCTTTCAATTTCGCACTGCTTTTATTGCACCTTCATCTCGGGTTTTTGGGCGAGGTGAACTTGTTATAGATCCTGCACAGATTGCCAAGAGATATCTATCGCGTTTCTTCTTGGTTGACTTCATGTCTGTGCTTCCTTTGCCACAGATTGTTGTGTGGAAATTTCTTCAGAGAGTAAAAGGCTCAGAAGTGTTGGCCACAAAAACGTCAATGCTGAGAGTTGTCATTCTTCAATACTTTCCGAGATTTGCACGCTTCTATGCTTTAAACTCAGACGTTAAAAAAAGTGCTGGCGGTATTTCTGATAATGCACTTCTGGGTGCAGCATACTATTTGCTCTGGTTCATGCTTGCCAGTCATATAACAGGGTCCGTGTGGTACTTGCTAGCCATAGAACGTAATGACACATGCTGGCAAATGGCTTGTGCTGATAATCCAGCATGTAACTTGAATTACTTAATATGTGGAAATAAGCATTTGCCAGGTTATGCTAGTTGGAGTCATGTCAGTCACAAGATTCTTCAAGAACGTTGCGCCGTTAACGAGGATGATAGCTCAGAATTCAATTATGGAATCTATACTCTGGCTATAAAATCTGAAATTGTTGGATCCAGGGAATTTTTTCCTAAATTATGTTACTGTTTATGGTGGGGCCTGCAAAATTTGAGTACACTTGGACAGGGTCTTCTAACCAGTACTTATCCTGGAGAGGTTTTGTTTTCCATAGTGATTGCTGTTGCTGGGCTTATTCTTTTTGCACTTCTTATTGGAAACATTCAgACGTACCTTCAATCAATCACTGTTCGTCTTGAGGAAATGAGGATTAAGAGGCGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCACCAGAACTAAGGCAAAGGGTAAGACAGTATAATTTATACAAGTGGCTTGAAACTAGAGGAGTAGATGAAGAGAGCTTGGTTCGGAGTCTTCCAAAAGATCTTAGGAGGGATATCAAACGCCATCTTTGTTTGAATTTAGTCAAAAGAGTTCCTCTCTTCGCTAACATGGACGATCGCTTGCTTGACGCAATCTGCGAGCGATTGAAGCCTACTCTATACACAGAAAGCACATTCATAGTTCGCGAAGGAGACCCAGTTAATGAGATGCTCTTCATCATTCGTGGTCGACTCGAAAGTGTCACTACAGATGGTGGAAGGAGTGGATTTTTCAACAGAGGCCTTCTCAAAGAAGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCATTGGACCCAAAATCGGGATCCAACTTGCCATCATCGACTCGAACCGTGATGGCCATACACGAGGTAGAGGCATTTGCTTTGGAAGcagaagaattaaaatttgttgcttCTCAGTTTCGGCGTCTTCACAGCAGACAAGTGCAGCAAACCTTCCGTTTCTACTCTCAGCAATGGAGAACATGGGCTGCTTGCTTCATTCAAGCTGCGTGGAGGCGTTATTCGAGGAGGAAGATTGCAGAAAAGCGGcgaagggaagaagaagaagaagaagcatacTTAACTGATTCTGATTATGAAGAagaggatgatgatgatgatcaaAGAGCATTGATTACACGGACTGATAGGGAGTCTGGTTCGTCTAGTCAGTTTGGACTTGGAATTAAGTCCACTATCTATGCTTCGCGCTTTGCTGCTAATGCTCTGCGTGCTCACAGGCACCGGGCGAGTTCGAAGACCTTGGGATTACAGAAGCCTCCGGAACCAGATTTTAGTGAGTTTGATGGAGAATG	2156	0.4128	MKKLRFNFEGLPYRRRGRKNASKSFNLGMKMGSGGLLTIGKSLKSGVTRAVFPEDLKVADKTIFDPQDRTLSIWYKAFELLCIASISCDPLFFYLPIFNKSYCMGIDSGLAYTAVTLRTVLDSFYLLRIAFQFRTAFIAPSSRVFGRGELVIDPAQIAKRYLSRFFLVDFMSVLPLPQIVVWKFLQRVKGSEVLATKTSMLRVVILQYFPRFARFYALNSDVKKSAGGISDNALLGAAYYLLWFMLASHITGSVWYLLAIERNDTCWQMACADNPACNLNYLICGNKHLPGYASWSHVSHKILQERCAVNEDDSSEFNYGIYTLAIKSEIVGSREFFPKLCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAVAGLILFALLIGNIQTYLQSITVRLEEMRIKRRDSEQWMHHRLLPPELRQRVRQYNLYKWLETRGVDEESLVRSLPKDLRRDIKRHLCLNLVKRVPLFANMDDRLLDAICERLKPTLYTESTFIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSGSNLPSSTRTVMAIHEVEAFALEAEELKFVASQFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRYSRRKIAEKRRREEEEEEAYLTDSDYEEEDDDDDQRALITRTDRESGSSSQFGLGIKSTIYASRFAANALRAHRHRASSKTLGLQKPPEPDFSEFDGE	718

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva01g00070	718	SMART	cnmp_10	471	602	IPR000595	-
	Bva01g00070	718	MobiDBLite	consensus disorder prediction	632	653	-	-
	Bva01g00070	718	SUPERFAMILY	Voltage-gated potassium channels	65	393	-	-
	Bva01g00070	718	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	6	715	-	-
	Bva01g00070	718	MobiDBLite	consensus disorder prediction	638	653	-	-
	Bva01g00070	718	SUPERFAMILY	cAMP-binding domain-like	401	591	IPR018490	-
	Bva01g00070	718	CDD	CAP_ED	471	602	IPR000595	-
	Bva01g00070	718	Pfam	Ion transport protein	72	398	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Bva01g00070	718	ProSiteProfiles	IQ motif profile.	607	636	IPR000048	GO:0005515
	Bva01g00070	718	Gene3D	Jelly Rolls	469	589	IPR014710	-
	Bva01g00070	718	Gene3D	-	78	397	-	-
	Bva01g00070	718	Gene3D	Helix hairpin bin	399	462	-	-
	Bva01g00070	718	MobiDBLite	consensus disorder prediction	696	718	-	-
	Bva01g00070	718	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED	6	715	-	-
	Bva01g00070	718	Pfam	Cyclic nucleotide-binding domain	492	581	IPR000595	-
	Bva01g00070	718	ProSiteProfiles	cAMP/cGMP binding motif profile.	471	601	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva01g00070	Bva-Chr1	560753	566425	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva01g00070	7	712	Ion Channels	AT1G15990	69.638	0.0	981

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva01g00070	K05391		-	qsu:112017775	1008.82