Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00053 ATGAGTTCTTCTGTCAATAACCAAAATCCTCTGACACCAAATGCTGTCTTCAGTGATTGCTCGGAAGGCCTTTGCAGCATATATTGTCCTCAATGGTGCTACATCATCTACCCACCTCCACcaccttcaatttttctcGGAGATAGCTCCGATGACGATTCTTCCAGCTTCGAGTTCTCTCCTCTCATAGTTGCCATAATTGGAATCTTAGCAAGTGCTTTCATTTTGCTCACTTACTATACCATTATCTCGCGGTTCTGCAGGAGAAGAGACCAGGTTAGTGATTCAGCTTCTCATTCGGATGAGCATGGGGACGGTTTAAATAACGAGCTGGCACaagtttcttcctcttctggGCTTCATGAGACtctcatcaaatcaattacTGTTTGTAagtacaagaaaaatgatgggTTTGTTGAGGGCACTGATTGTTCTGTGTGTTTGAGTGAGTTTCAAGAGAATGAGAACTTGAGATTATTGCCAAACTGCAACCACGCATTTCATCTTCCATGTATTGATACTTGGTTGAGATCCCATTCGAGTTGTCCTTTGTGTCGATCtaatatttcttctatttcaatttctttgtcGAATCAAAGACAAACTCCATTACAAGAACCACCATGTCCAACAATCAGTGTCTCCTCTGCCTTGGAATACCAGAGCAGAAATGATGCTGTTATTATGGTACAGAACTTGGAAAGAGGATTAGTTCAAGAAATTGTTGTTGATTTTGAAACTGATAATCTTCCTTCTAAATCACCAATTCAAGAGTGTGATAATGGAGACAATATGGAAGAGACAATTCAGCGCTATAAGAGGTCGATTTCCTTGAATTCTTGCTCTCGTGATGCCCGTCTGCGAGTTGCTGATATATTAAATGCAAACGAAGAAGATGAGGAATTTCAAAGGCAAGTATTGGAGGTAGGATCTTCAAGAGGCATTGAAGGTTATAGAGAAGAGAATGGGAAGAGCGGAGTGGTGAATATGGTGAAAAGTCCTGTGGGAATGAGGAGATCTGTTTCAACTGGGAGATTTGCTTTCACAAACTATGGAAAAGGGAAGCATTCTGTTCTTCCAAACTG 1088 0.3787 MSSSVNNQNPLTPNAVFSDCSEGLCSIYCPQWCYIIYPPPPPSIFLGDSSDDDSSSFEFSPLIVAIIGILASAFILLTYYTIISRFCRRRDQVSDSASHSDEHGDGLNNELAQVSSSSGLHETLIKSITVCKYKKNDGFVEGTDCSVCLSEFQENENLRLLPNCNHAFHLPCIDTWLRSHSSCPLCRSNISSISISLSNQRQTPLQEPPCPTISVSSALEYQSRNDAVIMVQNLERGLVQEIVVDFETDNLPSKSPIQECDNGDNMEETIQRYKRSISLNSCSRDARLRVADILNANEEDEEFQRQVLEVGSSRGIEGYREENGKSGVVNMVKSPVGMRRSVSTGRFAFTNYGKGKHSVLPN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00053 362 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 17 353 - -
Bva01g00053 362 CDD RING-H2_PA-TM-RING 144 187 - -
Bva01g00053 362 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Bva01g00053 362 Pfam Ring finger domain 144 187 IPR001841 -
Bva01g00053 362 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 353 IPR044675 -
Bva01g00053 362 SMART ring_2 145 186 IPR001841 -
Bva01g00053 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 195 IPR013083 -
Bva01g00053 362 SUPERFAMILY RING/U-box 131 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00053 Bva-Chr1 419237 420325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00053 7 361 C3H Transcription Factor Family AT5G17600 42.632 4.28e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00053 - - tcc:18599685 323.168