Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00048 ATGGCCGGCCTTGACTTGGGTTCAGCATCTTACTTTGTTCATCATCTTCAACGCCCTGACCTTCAATCCAATGAAGATGGTGAAAACCAAGACCGAGATGACAACAACCCTCAAGGGCTCGAGCTTGTCACGCCAAATCCCGGTCTCGGTGACCTGGTGGGTCGCCGGCCGAGAGGAAGACCTCCCGGCTCCAAAAACAAGGCTAAACCGCCGGTGATCATAACCCGGGAAAGCGCCAACACCCTCCGAGCTCATATCCTTGAAGTTAGCAGTCTCTGTGATGTGTTTGACTCGGTAGCAACTTACGCAAGGAAGAGACAACGAGGGATCTGTGTTCTGAGCGGTAGTGGCACGGTTACCAACGTCACGTTGAGGCAGCCAGCGGCGGTAGGGGCGGTGGTGACGCTACACGGCCGGTTCGAGATACTATCATTGTCAGGGTCATTTTTGCCACCACCAGCCCCTCCGGGTGCCACAAGTTTGACCATATTTCTGGCTGGGGGTCAGGGTCAAGTGGTAGGAGGGAATGTTGTTGGTCCTTTGATCGCTTCTGGACCAGTTATTGTTATTGCTTCTTCATTTACCAACGTGGCTTATGAAAGGTTGCCCTTAGATGAAGATGATTCACTACAGATGCAACAAGGGCAATCATCCGGGGGAGGCGGTGATAACGGTGGCAGTGGCGGAGTCAACAACGCCTTTTCGGACCCATCTTCTGGGTTACCTTTCTTCAATTTGCCACTAAACATGCCGCAGTTACCTGGTGACGGTTGGACCGGAAACTCAGGAGGGCGACAACCATACTG 806 0.531 MAGLDLGSASYFVHHLQRPDLQSNEDGENQDRDDNNPQGLELVTPNPGLGDLVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVSSLCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAVGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEDDSLQMQQGQSSGGGGDNGGSGGVNNAFSDPSSGLPFFNLPLNMPQLPGDGWTGNSGGRQPY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00048 268 MobiDBLite consensus disorder prediction 210 239 - -
Bva01g00048 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 210 - -
Bva01g00048 268 Gene3D - 82 216 - -
Bva01g00048 268 CDD DUF296 83 166 IPR005175 -
Bva01g00048 268 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
Bva01g00048 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 268 - -
Bva01g00048 268 MobiDBLite consensus disorder prediction 19 71 - -
Bva01g00048 268 MobiDBLite consensus disorder prediction 210 268 - -
Bva01g00048 268 MobiDBLite consensus disorder prediction 19 35 - -
Bva01g00048 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Bva01g00048 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 268 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00048 Bva-Chr1 364277 366600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00048 1 268 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 60.841 3.93e-92 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00048 - - gmx:100814613 411.379