Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00040 ATGAAGAATCAGGGTTCTGAATCTTGTTATCATAGTAAGGCAATAGAAGAACTTGTTAGAGGGCATGAATCTGCGAACCAGCTTCGCGAATTGTTCAATAAATCCAATGAAGGGTCTTGTGGTGTTGGTGGTGATAATTCAGCAGTGACTGTAACATTTGCTGAAGATCTTCTGGGGAAGGTGCTGAGATCATTTACAAACACCCTCTTGCTTCTCAATGAAAAAAACATTGATGAATCGGAAGAAATGTCTCAATTCCAAGTTAGAGACTCTCGTTCTTGGAAACCCACTAAGTCCGAGGATTCTGAAGAGAGTTGCAAGAGCACTTCTGGCATTAGACACCGATATAAAAGaagaAGAACTTCACAAACATGGGAAAGGGACTCTGAAGCACCAATAGAAGATGGCCACAAATGGAGAAAGTATGGACAAAAACAGATTCTCAATGCCAAACACCCAAGGAACTATTACAGGTGCACCCACAAATCTGATCAAGGTTGTCTAGCAACAAAACAGGAGCAGAAAATTCAAGATGAGCCTCCTTTGTTCAAGACCGTCTATTATGGAATCCACACATGCAGAAACTTGTTAAACCCAGAAATATTATTGGATTATGATGATTGTGCTTCAGAGTGTTTAATCAGCTTTGACAACAGTCTCCCAACCAAACAAAACCTTCCCTTGttctcatcttcatcttcatcaataATGAAAGAGTGCAACGAAGAGATTATTCAAGACCACCACTTGGCTCATCAATGCCAATCAACAGCATCTCAAGAAGATTACTTTCTTTCCCATGAATTCACTTTTGATTCCTCATGCTGCAGGAATCTCACATTATCATCAACACTTGAATCAGATCACAGTGCTGACATCTCTGAGTTCTTGTGTGATTTTGCCGAGTTTGATTTGTTTGAGccctttgaaattttaatgagtTA 944 0.3814 MKNQGSESCYHSKAIEELVRGHESANQLRELFNKSNEGSCGVGGDNSAVTVTFAEDLLGKVLRSFTNTLLLLNEKNIDESEEMSQFQVRDSRSWKPTKSEDSEESCKSTSGIRHRYKRRRTSQTWERDSEAPIEDGHKWRKYGQKQILNAKHPRNYYRCTHKSDQGCLATKQEQKIQDEPPLFKTVYYGIHTCRNLLNPEILLDYDDCASECLISFDNSLPTKQNLPLFSSSSSSIMKECNEEIIQDHHLAHQCQSTASQEDYFLSHEFTFDSSCCRNLTLSSTLESDHSADISEFLCDFAEFDLFEPFEILMS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00040 314 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00040 314 Gene3D WRKY domain 119 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva01g00040 314 Pfam WRKY DNA -binding domain 134 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00040 314 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 12 291 - -
Bva01g00040 314 MobiDBLite consensus disorder prediction 81 111 - -
Bva01g00040 314 ProSiteProfiles WRKY domain profile. 128 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00040 314 MobiDBLite consensus disorder prediction 81 129 - -
Bva01g00040 314 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 291 IPR044810 GO:0003700
Bva01g00040 314 SUPERFAMILY WRKY DNA-binding domain 130 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00040 Bva-Chr1 300032 301828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00040 13 213 WRKY Transcription Factor Family AT3G56400 37.037 5.16e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva01g00040 WRKY 7.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00040 - - gmx:100170682 277.33