Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00039 ATGGAGAATCTGGGTTCTGAATCTTGTTATCATAGTAAGGCAATAGAAGAACTTGTTAGAGGGCATGAATTTGCGAACCAACTTCGCGAATTGTTCAATAAATCCAATGAAGGGTCTTGTGGTGTTGGTGGTGATAATTCAGCAGTGACTGTAACATTTGCTGAAGATCTTCTGGGGAAGGTGCAGAGATCATTTACAAACACCCTCTTGCTTCTCAATGAAAAAAACAATGATGAATGTGAAGAAGTCTCTCAATTGCAAGTTAGAGACTCTTGTTCTTGGAAACCCACTAAGTCTGAGGATTCTGAAGAGAGTTGCAAGAGCACTTCTGGCATTAGAGACCGAAGAGGCCGATATAAGAGaagAAGAACTTCACAAACATGGGAACGGGACTCTGAAGCACCAATAGAAGATGGCCACCAATGGAGAAAGTATGGACAAAAACAGATTCTCAATGCCAAACACCCAAGGAACTATTACAGGTGCACCCACAAATCTGATCAAGGTTGTCTAGCAACAAAACAGGAGCAGAAAATTCAAGATGAGCCTCCTTTGTTCAAGACCATCTATTATGGAACCCACACATGCAGAAACTTGTTAAACCCAGAAATATTATTGGATTATGATGATTGTGCTTCAGAGTGTTTAATCAGCTTTGACAACAGTCTCCCAACCAAACAAAACCTTCCCTTGttctcatcttcatcttcatcaataGTGAAAGAGTGCAAGGAAGAGATTATTCAAGACCACCACTTGGCTCATCAATGCCAATCAACACCATCTCAAGAAGATTACTTTCTTTCCCATGAATTCACTTTTGATTCCTCATGCTGCAGGAATCTCACATTATCATCAACACTTGAATCAGATCACAATGCTGACATCTCTGAGTTCTTGTGTGATTCTGCCGAGTTTGATTTGTTTGAGccctttgaaattttaatgagtTA 953 0.3851 MENLGSESCYHSKAIEELVRGHEFANQLRELFNKSNEGSCGVGGDNSAVTVTFAEDLLGKVQRSFTNTLLLLNEKNNDECEEVSQLQVRDSCSWKPTKSEDSEESCKSTSGIRDRRGRYKRRRTSQTWERDSEAPIEDGHQWRKYGQKQILNAKHPRNYYRCTHKSDQGCLATKQEQKIQDEPPLFKTIYYGTHTCRNLLNPEILLDYDDCASECLISFDNSLPTKQNLPLFSSSSSSIVKECKEEIIQDHHLAHQCQSTPSQEDYFLSHEFTFDSSCCRNLTLSSTLESDHNADISEFLCDSAEFDLFEPFEILMS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00039 317 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 290 IPR044810 GO:0003700
Bva01g00039 317 Pfam WRKY DNA -binding domain 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00039 317 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00039 317 ProSiteProfiles WRKY domain profile. 131 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva01g00039 317 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 290 - -
Bva01g00039 317 MobiDBLite consensus disorder prediction 94 113 - -
Bva01g00039 317 SUPERFAMILY WRKY DNA-binding domain 133 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva01g00039 317 Gene3D WRKY domain 122 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva01g00039 317 MobiDBLite consensus disorder prediction 94 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00039 Bva-Chr1 271669 273417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00039 13 216 WRKY Transcription Factor Family AT3G56400 36.574 1.73e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva01g00039 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00039 - - gmx:100170682 275.404