Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00029 ATGCTGAGATTGAGAATAGGTGGATATGTCTTTGCTGTTTGGTTTTGTTATTTCATCATTGCAGCAGCTACACAAAGAACAAAGCCTTCAGAAGTGAATGCATTGATAGAGGTCAAGAAAAGTTTGATTGATCCCAGTGGCCATCTGAGGAACTGGAATAAGGGCGATCCATGTACATTGAACTGGACTGGAGTTTCATGTTCTGATAAGGTTGGGAGTGATGGACATTTCCACGTCGGAGAGATCTACCTAATGACTTCAAATCTCTCGGGAACTCTATCACCTCAGCTTGGTCAGCTTTCTCATCTTCAGATAATGAATTTCATGTGGAATGATCTAACAGGCACTATACCAAAGGAGATCGGAAATATTACATCGTTGAGACTCTTGCTCCTGAATGGCAATAAGTTATCGGGTACTTTACCTGATGAGCTTGGCAATCTTTCACATTTGAATAGGCTCCAAGTCGATGAAAACCAATTGTCAGGTCCAATACCACAATTGTTTGCCAACTTGATCAATGTTAGACACCTCCACATGAACAACAACTCATTTAGTGGTCAAATTCCACCTGTGCTTTCAAAACTATCCACTCTTATGcatttGCTTGTGGATAACAATAACTTATCTGGCTATCTTCCACCAGAATTCTCCAAGTTACCGGAGTTGCGCATACTCCAACTTGATAACAATGATTTCAGTGGGACTAGAATTCCTTCTACCTATAGTAACTTATCTAGACTAGTAAAGCTAAGTCTCAGAAACTGCAGTTTGCAAGGAATGGTTCCTTATCTGAGTTCAATACGCACACTTAAGTATTTAGATCTTAGCTGGAATAATCTTACAGGGCCCATACCATCAAGTAAGCTTGCAGACAATATGACGACTATTGATCTGTCCAACAACCTCCTCAATGGATCTATCCCTGCAAGTTTCTCaaatcttcctcttcttcagaCCCTGTCATTGAAGAACAATTTATTGTCTGGATCTATCCCTGCTGGCATATGGCAAAACAAGTCCTTCAGTATGAGTGCTAAGTTTGAAGTTGATCTCAGGAACAACTCACTTTCTGACATTCTAGGATCTCTAAATCCTCCAGAAAATATCACCTTGAGGCTTGCTGGCAATCCTATATGCAAGAATGCAAACATCAAAAACATTGATCCGTATTGTGGACCTGAAGGACTTGAGGGAGCAGTAAATGTGACAAATTCAACGATTGTCTGTCCAGTTCAAGCTTGCCCTGTGGATAATTTCTATGAATATGTCCCAAATTCCCCTCTTCATTGCTTTTGTGCTGCACCTATCAGAATTGGATACCGGCTAAAAAGCCcaagtttttcttattttcctcCATATATTTCTCCCTTCGAGTCATATTTAACGAAGTCCTTAAACTTGGAACTGTATCAACTATCAATAGTTTCATATGCCTGGGAAGAAGGTCCTCGTCTAAGGATGTATTTGAAACTGTTTCCTACGTCTAATGATAAACATTCAAGTATGTTCAATACAAGTGAGGTCCATCGCATTAAAGGTAGATTTTCTTCATGGGACTTTCCTTCCAATGATTTTTTTGGACCATACGAACTCCTGAACTTCACTCTCCAGGGACCTTATGCTAATAtAATCTTTGAGgaagaaaggaggaaaaacAGTACAGGCATCTTGGCAGCCTCTATTGTAGCAGCTCTTGCTTCAATTATAGCAATTTCTGCAATAGTCACTATCCTGGTTGTTAGAAGACAAGTCAGACATCAGCACAAGCTATCTAGGAGACATACATcctctaatattaaaatagatggCGTGAAGGCATTCACTTTTAAAGACCTTGCTCTTGCTACGAACAATTTTTGCAGCTCAGCTCAAGTTGGCCAAGGAGGTTATGGGAAGGTCTACAAAGGAATTCTGTCTGATGGATCAATTGCAGCCATCAAGAGAGCAGAACAAGGTTCCTTACAaggacaaaaagaatttttgaCTGAAATTGAACTCTTATCTAGGTTACATCATAGAAACCTAGTCTCACTTATTGGATACTGTGATGAAGAAGGGGAGCAGATGCTGGTTTATGAATTCATGCCTAATGGAACCTTGCGGAACTGGATTTCTGGTAAAACCACAGGCTACCTAAATTTTGGTATGAGGTTGCGAATCGCAATGGGTTCAGCTAAAGGTATACTATATCTCCATACAGAGGCTAACCCACCTATATTTCACCGAGACATCAAAGCTAGTAACATACTTTTGGACTCAAAGTTTATTGTTAAAGTGGCTGATTTTGGACTTTCGCGGCTTGCACCCCACCTAGATGAAGAAGGGACTGTGCCTAAATATGTGTCAACGGTTGTGAGGGGAACACCAGGTTATCTAGATCCAGAATACTTCTTGACTCACAAGCTAACAGACAAAAGTGATGTCTATAGCCTTGGAGTTGTGTTTCTGGAGCTTTTGACAGGCATGCAGCCAATATCACATGGGAAAAACATTGTTCGTGAGGTGAATGTGGCTAGTCAATCTGGCATGATATTTTCCATTATAGATAGCAGAATGGGTAGCTATCCATCTGATTGTATTGAGAGGTTTTTAACTCTGGCCCTCAGTTGCTGCCATGACAATCCAGAGAAGCGACCATCAATGCTAGATGTGGTCAGGGAACTAGAAAATATTCTTGAAATGTTGCCTGAAATTGAAACTGAAACTGCTTCCTCGGATTTTACTTCGGATTACACTCACAATGGCAATCTAGCATCATCGTCATCAACATCCTACAATACCAGGGAGTACCAGCAGGTATCCTCAACTCTGTCTGGAAGTGATCTTGTCAGTGGTGTCATTCCAAACATTGTTCCTCGCTG 2864 0.3953 MLRLRIGGYVFAVWFCYFIIAAATQRTKPSEVNALIEVKKSLIDPSGHLRNWNKGDPCTLNWTGVSCSDKVGSDGHFHVGEIYLMTSNLSGTLSPQLGQLSHLQIMNFMWNDLTGTIPKEIGNITSLRLLLLNGNKLSGTLPDELGNLSHLNRLQVDENQLSGPIPQLFANLINVRHLHMNNNSFSGQIPPVLSKLSTLMHLLVDNNNLSGYLPPEFSKLPELRILQLDNNDFSGTRIPSTYSNLSRLVKLSLRNCSLQGMVPYLSSIRTLKYLDLSWNNLTGPIPSSKLADNMTTIDLSNNLLNGSIPASFSNLPLLQTLSLKNNLLSGSIPAGIWQNKSFSMSAKFEVDLRNNSLSDILGSLNPPENITLRLAGNPICKNANIKNIDPYCGPEGLEGAVNVTNSTIVCPVQACPVDNFYEYVPNSPLHCFCAAPIRIGYRLKSPSFSYFPPYISPFESYLTKSLNLELYQLSIVSYAWEEGPRLRMYLKLFPTSNDKHSSMFNTSEVHRIKGRFSSWDFPSNDFFGPYELLNFTLQGPYANIIFEEERRKNSTGILAASIVAALASIIAISAIVTILVVRRQVRHQHKLSRRHTSSNIKIDGVKAFTFKDLALATNNFCSSAQVGQGGYGKVYKGILSDGSIAAIKRAEQGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRNWISGKTTGYLNFGMRLRIAMGSAKGILYLHTEANPPIFHRDIKASNILLDSKFIVKVADFGLSRLAPHLDEEGTVPKYVSTVVRGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVASQSGMIFSIIDSRMGSYPSDCIERFLTLALSCCHDNPEKRPSMLDVVRELENILEMLPEIETETASSDFTSDYTHNGNLASSSSTSYNTREYQQVSSTLSGSDLVSGVIPNIVPR 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00029 954 Gene3D Phosphorylase Kinase; domain 1 580 695 - -
Bva01g00029 954 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Bva01g00029 954 Gene3D Transferase(Phosphotransferase) domain 1 696 913 - -
Bva01g00029 954 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 926 - -
Bva01g00029 954 Gene3D Ribonuclease Inhibitor 28 193 IPR032675 -
Bva01g00029 954 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 926 - -
Bva01g00029 954 SMART LRR_typ_2 245 268 IPR003591 -
Bva01g00029 954 SMART LRR_typ_2 315 339 IPR003591 -
Bva01g00029 954 SMART LRR_typ_2 172 196 IPR003591 -
Bva01g00029 954 SMART LRR_typ_2 124 148 IPR003591 -
Bva01g00029 954 SMART LRR_typ_2 220 244 IPR003591 -
Bva01g00029 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Bva01g00029 954 CDD STKc_IRAK 626 892 - -
Bva01g00029 954 SMART serkin_6 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva01g00029 954 SUPERFAMILY Protein kinase-like (PK-like) 605 916 IPR011009 -
Bva01g00029 954 ProSiteProfiles Protein kinase domain profile. 620 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva01g00029 954 Gene3D Ribonuclease Inhibitor 265 393 IPR032675 -
Bva01g00029 954 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Bva01g00029 954 Pfam Protein kinase domain 623 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva01g00029 954 SUPERFAMILY L domain-like 46 385 - -
Bva01g00029 954 Gene3D Ribonuclease Inhibitor 195 264 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00029 Bva-Chr1 192937 203948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00029 5 903 Receptor kinase-like Gene Family AT5G01950 63.164 0.0 1138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Bva01g00029 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00029 - - gmx:100815005 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00029 01 192937 203948 Bva01g00029 01 192937 203948 ECH