Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00028 ATGAAAACCGGTCCAAGGTTGGGAGGTTCTCGGATCTTTCAGACGTTATCCCCAATCTTCCTCGAAACTTTTACAACAGCCATAAAATCAAAATTCCCAGCCCTTCATCACCTGGATAATGTCTTTGACTTCCCATTTTATATGCTACTGCTACAAGGCCTCCATTCCATTTCTACCTGCACCCAGACTAGGGGTTctttctcacattttttattcatctcTACTTTTAGAGTTGTTATTGGGATGCTGAGAATGAGAATAGATGGATTTCTCTTTGCTGTTTCATTTTGTTATATCATTGCCGCAGCAGCTACACAAAGAACAAATCCTTCAGAAGTGAATGCATTGATAGAGgtcaagaaaaaattgattgatcCCAAGGGCCACCTGAGGAGCTGGAATAAGGGCGACCCATGTGCATTAAAGTGGAATGGAGTTTCATGTCTTGATAGGGTTGAGAGTGATGGATATTTCCACATCCGAGAGATCAACTTAATGACTTCAAATCTCTTGGGAACTTTATCACCTCAGCTTGGTCAGCTTTCTCATCTTTCGATAATgaATTTCATGTGGAATGACCTTACAGGCACTATACCAAAGGAGATTGGAAATATCGCATCGTTGACATTCTTGCTTCTAAGTGGCAATAAGTTGTCGGGTTCTTTGCCAGTTGAGCTTGGAaatctttcaaatttgaataGGCTACAAGTGGATGAAAACCAATTATCAGGTCCAATACCACAATCGTTTGCCAACTTGATCAATGTTTTGCACCTCCATATGAACAACAACTCATTTAGCGGTCAAATTCCACCTGTGCTTTCAAAACTATCCACTCTTAAGCATTTGCTTGTGGATAACAATAACTTATCTGGCTATCTTCCATCAGAGTTCTCCAACTTATCGGAGTTGCGCATACTCCAACTTGATAACAATGATTTCAGTGGGACTACAATTCCTTCTACCTATAGAAACTTCTCCAGACTAGTAAAACTAAGTCTTAGAAACTGCAGTTTGGAAGGAGCTGTTCCTGATCTGAGTTCAATACGCAAGCTTCACTATTTAGAACTTAGCTGGAACAATCTTACAGGGCCAATACCATCAACTAAACTTGCAGACAATATGACGACGATTGATCTGTCCAACAACAAACTCAATGGATCTATCCCTGAAAGCTTCTCAAATCTTCCTATTCTTCAGAACCTGTTATTGGAGAACAATTTCTTGTCTGGGACTATCCCTGCTAGTATATGGCAAAATATGTCCTTCAGTACGAGtgctaaacttaaaatTGATCTCAGAAACAACTCACTTTCAAACATTCTGGGATATCTAAATCCTCCAGCAAATATCACCTTGAGGCTTGCTGGCAATCCTATATGCAAGAATGCAAACATCAAAAACATTGATCCGTATTGTGGACCTGAAGGACTTGAGGGAGCAGTAAATGTGACAAATTCAACGATTGTCTGTCCTGTTCAAGCTTGCCCTGTGGATGGTTTCTATGAATATGTCCTAAATTCCCCTCTTCATTGCTTTTGTGCTGCACCTATCAGAATTGGATACCGGCTAAAAAGCCcaagtttttcttattttcctcCATATATTTCTCCCTTGGAGTCATATTTAACGAAGTCCTTAAACTTGGAACTGTATCAACTATCAATAGCTTCATATGCCTGGGAACAAGGGCCTCGTCTAAGGATGTATTTGAAACTGTTTCCTACGTCTAATGATAACCATTCAAGTATGTTCAATACAAGTGAGGTCTATCGCATTAAAGGTAGATTTTCTTCATGGGACTTTCCTCCCAATGATTTTTTTGGACCATACGAACTCCTGAACTTCACTCTCCAGGGACCTTATGCTAATATAATTTTTGAGCAAGAAAGGAGGAAAACTAGAACAGGCATCTTGGCAACCTCTATAGTAGCAGCTCTTGCTTTCATTGTAGCAATTTCTACAATAATCACTGTCCTGATTGTTAGAAGACAAGTAAGACGTCAGCACAAGCTATCAAGGAGACATACATCctctaatattaaaatagatggCGTAAAGGCGTTCACTTTTAAAGAACTTGCTCTTGCTACGAACAAGTTTTGCAGCTCAGCTCAAGTTGGCCAAGGAGGTTATGGGAAGGTCTACAAAGGCATTCTGTCTGATGGAACAATTGTAGCCATCAAGAGAGCAGAAGAAGGTTCCTTACAaggacaaaaagaatttttgaCTGAAATTGAACTCTTATCAAGGTTACATCATAGAAACCTAGTCTCACTTATTGGATACTGTGATGAAGAAGGGGAGCAGGTGCTGGTTTATGAATTCATGCCTAATGGAACCTTGCAGAACTGGATTTCTGGTAAAACCACTAGAAACCTAAATTTTGGTATGAGGTTGCAAATCGCAATGGGTTCAGCTAAAGGCATATTATATCTCCATACAGAGGCCAACCCACCTATATTTCACCGAGACATTAAAGCCAGTAACATACTTCTGGACTTAAAGTTTATTGCTAAAGTGGCTGATTTTGGACTCTCACGGCTTGCACCCCACCTAGATGAAGAAGGGACTGTCCCTAAATATGTGTCAACAGTTGTGAAGGGAACACCGGGTTATCTAGATCCAGAGTACTTCTTGACTCACAAGTTTACAGACAAAAGTGATGTCTATAGCCTTGGAGTTGTGTTTCTGGAGCTTTTGACAGGCAAGCAGCCAATAACACATGGGAAAAACATTGTTCGCGAGGTGAATGTGGCTAGTCAGTCTGGCATGATATTTTCCATTATAGATAGCAGCATGGGTAGCTATCCATCTGATTCTCTTGAGAGGTTTTTATCTCTGGCCCTCAGTTGCTGCCATGACAATCCAGAGAGGCGACCATCAATGCTAGAAGTGGTCAGGGAGCTAGAAAATATTCTTGCAATGTtgccaaaaattgaaactgaaaCTGAAACTGAAACTGCTTTCGCAGATTTTACTTCAGATTATACTGACGACAGCAATATAGCATCGTCATCATTAGCAGCATCCTACAATACCAGGGATTACCGACAGGTATCCTCAACTGTGTCTGGAAGTGATCTTGTCAGTGGCGTCATTTCAACGATTGTTCCTCGCTG 3122 0.3908 MKTGPRLGGSRIFQTLSPIFLETFTTAIKSKFPALHHLDNVFDFPFYMLLLQGLHSISTCTQTRGSFSHFLFISTFRVVIGMLRMRIDGFLFAVSFCYIIAAAATQRTNPSEVNALIEVKKKLIDPKGHLRSWNKGDPCALKWNGVSCLDRVESDGYFHIREINLMTSNLLGTLSPQLGQLSHLSIMNFMWNDLTGTIPKEIGNIASLTFLLLSGNKLSGSLPVELGNLSNLNRLQVDENQLSGPIPQSFANLINVLHLHMNNNSFSGQIPPVLSKLSTLKHLLVDNNNLSGYLPSEFSNLSELRILQLDNNDFSGTTIPSTYRNFSRLVKLSLRNCSLEGAVPDLSSIRKLHYLELSWNNLTGPIPSTKLADNMTTIDLSNNKLNGSIPESFSNLPILQNLLLENNFLSGTIPASIWQNMSFSTSAKLKIDLRNNSLSNILGYLNPPANITLRLAGNPICKNANIKNIDPYCGPEGLEGAVNVTNSTIVCPVQACPVDGFYEYVLNSPLHCFCAAPIRIGYRLKSPSFSYFPPYISPLESYLTKSLNLELYQLSIASYAWEQGPRLRMYLKLFPTSNDNHSSMFNTSEVYRIKGRFSSWDFPPNDFFGPYELLNFTLQGPYANIIFEQERRKTRTGILATSIVAALAFIVAISTIITVLIVRRQVRRQHKLSRRHTSSNIKIDGVKAFTFKELALATNKFCSSAQVGQGGYGKVYKGILSDGTIVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEEGEQVLVYEFMPNGTLQNWISGKTTRNLNFGMRLQIAMGSAKGILYLHTEANPPIFHRDIKASNILLDLKFIAKVADFGLSRLAPHLDEEGTVPKYVSTVVKGTPGYLDPEYFLTHKFTDKSDVYSLGVVFLELLTGKQPITHGKNIVREVNVASQSGMIFSIIDSSMGSYPSDSLERFLSLALSCCHDNPERRPSMLEVVRELENILAMLPKIETETETETAFADFTSDYTDDSNIASSSLAASYNTRDYRQVSSTVSGSDLVSGVISTIVPR 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00028 1040 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Bva01g00028 1040 SMART serkin_6 701 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva01g00028 1040 SUPERFAMILY Protein kinase-like (PK-like) 686 994 IPR011009 -
Bva01g00028 1040 Gene3D Ribonuclease Inhibitor 271 370 IPR032675 -
Bva01g00028 1040 SUPERFAMILY L domain-like 128 466 - -
Bva01g00028 1040 CDD STKc_IRAK 707 973 - -
Bva01g00028 1040 ProSiteProfiles Protein kinase domain profile. 701 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva01g00028 1040 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 89 997 - -
Bva01g00028 1040 Gene3D Phosphorylase Kinase; domain 1 672 776 - -
Bva01g00028 1040 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Bva01g00028 1040 Gene3D Ribonuclease Inhibitor 109 270 IPR032675 -
Bva01g00028 1040 Gene3D Ribonuclease Inhibitor 371 459 IPR032675 -
Bva01g00028 1040 Gene3D Transferase(Phosphotransferase) domain 1 777 996 - -
Bva01g00028 1040 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 89 997 - -
Bva01g00028 1040 Pfam Leucine rich repeat N-terminal domain 110 148 IPR013210 -
Bva01g00028 1040 Pfam Protein kinase domain 704 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00028 Bva-Chr1 177396 189289 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00028 94 985 Receptor kinase-like Gene Family AT5G01950 61.873 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Bva01g00028 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00028 - - gmx:100815005 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00028 01 177396 189289 Bva01g00028 01 177396 189289 ECH