Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00020 ATGGAAGAAGGATTAGATGGCCTCATACGGAGGCTTTTGGAACCGAGGAAGAACAGAGGTAAGCGTATTCAGCTTATAGAATCAGAAATTCGCGACCTTTGCCTTGCTGCAAAAGAAATCTTGCTCAGCCAACCTAACTTACTCGAATTGGAAGCTCCCATTAACGTTTgtgGGGACATACACGGGCAATATCCAGACCTGTTGCGTCTGTTCGAGAATGGTGGTTTCCCTCCGGAATCCAATTATCTATTTCTTGGAGACTATGTAGACAGAGGAAAACAGAGCTTAGAAACCATATGCCTCTTGCTGGCCTACAAGATCAAATTCCCAGaaaactttttccttttacgaGGGAATCATGAATGTGCTTCCATCAACAGAATCTATGGATTCTATGACGAGTGCAAGAGGAGATTCAGCGTCCGTCTATGGAAGGCTTTTACAGAATGCTTCAACTGTTTGCCAGTAGCTGCAGTGATCGATGACAAGATTCTATGTATGCATGGTGGGCTTTCTCCAGAGATGCAGAGCATGAATCAGATCCGAGAAATACAAAGGCCAATTGACGTGCCAGACCAAGGCCTCATGTGCGATCTGCTTTGGGCTGATCCTGACAGAGACATCAAAGGTTGGGGAGAGAATGACAGAGGGGTTTCCTACACTTTTGGCCCTGACAAGGTCGCTGAATTCTTGCAGAAACATGATCTTGATCTTGTCTGCCGGGCTCATCAgGTTGTTGAAGATGGTTACGAATTCTTTGCAGAGAGGCAGCTAGTGACCATATTTTCAGCGCCAAACTATTGTGGAGAGTTCAATAATGCGGGTGCACTCATGTGCGTTGATGAAACTTTACTCTGCTCGTTTCAGATACTCAAACCCAAAACTCTGCAGCTGGATTA 899 0.4438 MEEGLDGLIRRLLEPRKNRGKRIQLIESEIRDLCLAAKEILLSQPNLLELEAPINVCGDIHGQYPDLLRLFENGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKAFTECFNCLPVAAVIDDKILCMHGGLSPEMQSMNQIREIQRPIDVPDQGLMCDLLWADPDRDIKGWGENDRGVSYTFGPDKVAEFLQKHDLDLVCRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFNNAGALMCVDETLLCSFQILKPKTLQLD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00020 299 Gene3D - 2 298 IPR029052 -
Bva01g00020 299 PRINTS Serine/threonine phosphatase family signature 53 80 IPR006186 GO:0016787
Bva01g00020 299 PRINTS Serine/threonine phosphatase family signature 178 205 IPR006186 GO:0016787
Bva01g00020 299 PRINTS Serine/threonine phosphatase family signature 82 109 IPR006186 GO:0016787
Bva01g00020 299 PRINTS Serine/threonine phosphatase family signature 115 139 IPR006186 GO:0016787
Bva01g00020 299 PRINTS Serine/threonine phosphatase family signature 149 175 IPR006186 GO:0016787
Bva01g00020 299 PRINTS Serine/threonine phosphatase family signature 235 255 IPR006186 GO:0016787
Bva01g00020 299 PRINTS Serine/threonine phosphatase family signature 257 273 IPR006186 GO:0016787
Bva01g00020 299 ProSitePatterns Serine/threonine specific protein phosphatases signature. 116 121 IPR006186 GO:0016787
Bva01g00020 299 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 2 5 295 - -
Bva01g00020 299 CDD MPP_PP1_PPKL 5 293 - -
Bva01g00020 299 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 5 295 - -
Bva01g00020 299 Pfam Calcineurin-like phosphoesterase 53 245 IPR004843 GO:0016787
Bva01g00020 299 SMART pp2a_7 25 295 IPR006186 GO:0016787
Bva01g00020 299 Pfam Serine-threonine protein phosphatase N-terminal domain 5 51 IPR031675 -
Bva01g00020 299 SUPERFAMILY Metallo-dependent phosphatases 23 294 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00020 Bva-Chr1 127697 129357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00020 32 241 Calmodulin-binding Proteins AT5G63870 31.600 7.58e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00020 K06269 - gmx:100804212 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00020 01 127697 129357 Bva01g00020 01 127697 129357 ECH