Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00012 ATGTCCTTGGCTAGAAAGGTGTCAACGGAGTTTCGCCTTCGAAGGGTTAGGGCATTAACGCCTATGGAAGCGTCTAGTGCCAACCCCGACATGTTCAGAACTCCTTCCGGAACTTCTAATTCAAGAAGATATGGGATTTTCTCAGCCTCTAATATAATTCAGGCACCCTTATCGGTGTTGTTGGAGTATTCAGGTATTCTGCGAAGCAGGTCTAATCACCAAGAGAACGAGGGCTTGATTAATGGTCGACTCTCTTCTGGATTCCATGACCATCTTCATAGTCGTCTTGAAGAACCTTCTGCAATTTCCAGTGATGGGGAAGTCTCCATCAGGATTATTGGTCCTGGTGAACAAGACCTTGATAGGGAAGGCTCTGGTTTGGTTGTTGGTCAGGCCAGGGAGTCACTTTACCAGAATGAGGCTTCCGCGCAATCTTTGCCTGGGATGCCCTCCACAACACTGCCGCCTTCTTCGGAGAGTCAGCCAGATTCAAGGAGTGATCGTGTTGCAGGAGAGGGTGTTTCCCAATCTGTTAATTCAACTGCGGATACAGAAGCAGGTGATGGTGTTGGGACTAACGGTAGGGATTCTTCTTACCAGAGATACGATATTCAGCAGGCTGCTAGGTGGATTGAGCAGATCTTGCCTTTCTCTTTACTATTGCTGGTTGTCTTCATCCGGCAGCATTTACAAGGTTTTTTTGTCACAATTTGGATTGCTGCTGTCCTTTTCAAGTCCAATGATATCCTACGGAAACAGACTGCACTGAAGGGAGAGAGGAAAGTTCCTGTTCTAGTTGGCATTTCTATTGCATTTGCTCTTCACGTGGTTGGTGTTTATTGGTGGTATCGGAATGATGATCTGCTGTATCCTCTGATTATGCTTCCTCCCAAAACTATACCTCCTTTCTGGCATGCTATTTTTGTCATCATGGTTAATGATACTTTAGTCCGCCAGGTAGCAATAATATTCAAGTGTATTTTGTTGATGTATTACAAGAACAGCAGAGGTCGAAATTATCGTAAGCAGGGGCAAATGCTGACTTTGGTTGAGTACCTGCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTATGGTACCGTTTCTTCTTGAACAAAGAGTATGGGAGCCTCTTTTCATCACTAATGACAGGATTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCATTTTTTGCTGCTGTCAAGGCATTGTCACGGAAAGAAGTACACTATGGAGCTTATGCAACATTAGAGCAGGTCAATGCAACTGGCGATCTTTGTGCTATATGCCAGGAGAAGATGCATGCCCCTATCTTACTTCGTTGCAAACACATCTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGATCTCAGATCATTTGGTGATGGTTCAACCAGTctgttttttcaattatttta 1481 0.4429 MSLARKVSTEFRLRRVRALTPMEASSANPDMFRTPSGTSNSRRYGIFSASNIIQAPLSVLLEYSGILRSRSNHQENEGLINGRLSSGFHDHLHSRLEEPSAISSDGEVSIRIIGPGEQDLDREGSGLVVGQARESLYQNEASAQSLPGMPSTTLPPSSESQPDSRSDRVAGEGVSQSVNSTADTEAGDGVGTNGRDSSYQRYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKVPVLVGISIAFALHVVGVYWWYRNDDLLYPLIMLPPKTIPPFWHAIFVIMVNDTLVRQVAIIFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATLEQVNATGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00012 493 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 22 493 IPR044235 GO:0061630|GO:1904294
Bva01g00012 493 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 493 - -
Bva01g00012 493 SUPERFAMILY RING/U-box 424 475 - -
Bva01g00012 493 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
Bva01g00012 493 ProSiteProfiles Zinc finger RING-type profile. 432 470 IPR001841 -
Bva01g00012 493 SMART ring_2 432 469 IPR001841 -
Bva01g00012 493 CDD RING-HC_RNFT1_like 431 470 - -
Bva01g00012 493 MobiDBLite consensus disorder prediction 140 195 - -
Bva01g00012 493 Pfam Zinc finger, C3HC4 type (RING finger) 430 473 - -
Bva01g00012 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 480 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00012 Bva-Chr1 88734 94424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00012 22 493 C3H Transcription Factor Family AT5G01960 69.556 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00012 - K22379 pvy:116129988 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00012 01 88734 94424 Bva01g00012 01 88734 94424 ECH