Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00003 ATGGCCGCTTGTGCTTTACTCAGTGGTGGCAGTAGTAGCACTGATGCAGCTGACACCGGAAACGGAACTACTAGTCCCTTGACCAGTGCCTCCAACATCAGCAGTGAAGAACACGGCTTGCATCGCCCGCCGGGTCCATCCGACAGAAAAATGGTGAGAAAGAGGATGGCCTCTGAAATGGAAGTTCATACCCTGCCCGTCAACGTTCACGCCACTGGAGATTATCTCAGGTTTCCCCGTCGAAGTGCCATGTCGACGACGTTAAATTGCTCTTCACCCACTGCAGATAAAGCGGCCACAACAGTAGCAGCTGCGAGTTATTATAACTGTCactataactataattataatgttcCTAGTCCAAACCCAACTGTGACGGTTCCCAACTACTCCGCCGTAACGTCAGGCGGGAATCACCAAAGCCAAAACCCGAACCCGGACCCTAACCCTGCTCCTGCAGTCTGTGGATTCTCAGGGCTACCACTGTTTCCATCGGAAAGAAATGGAGATAACCGTACTAGGAACAGCAGTAGCACTAGTACTGTTGAAGTTGTAGCCTCTGCCACAAGCACATCCATGGAAGACGCCTCAGCCACGGCTTGGATCGACGGCATCTTAAAGGATCTCATACATAGCTCCACCAATGTCTCAATCCCTCAGCTCATCAACAACGTGAGGGAGATTATCTATCCTTGCAACCCCAACCTCGCCGTCGTTCTTGAATACAGGTTGCGCCTGCTCACATCCACAACTGAGTCTATCTCAAACTATGCAGCagcagagagaaagagaactgAAGGCTTGCCTGCGGTAGCCGTGGGTTTGAACCAGAGGTCTTTCAATCAGGATCATCAAGCAGCTAATGGTTACTCATCCGGGTTGAAGCTCAGTAGATTGGATGACATTGTTCTGAATATGCATTTTCCTGATTCATCTGCGGCTTCAGCTTCTCCCAATCAGATATACTCGAATTGGGGAGTGTCTCCCATCATTGCTTTAACCCCTGACGGGGAAAGCCCTTCGGTGGTTACTTTACTGTCGCCGCCACTATCGTCATCAAATAATCAGAGTTATTCGCCGCCGCCACCTCAAGAGAAGAATCACCATCAAAATGAGAGTAACAATCACCACGAAGAAGCGTGCTCTTCTCCTTCTGAGCATGgagcagcagcaacaacaacaacaacggATGCAGATGCCATCctaacaagaaagaagaagaaggaggagaTGCTACAACAGAAAAGAGATGAAGAGGGGTTACACCTCCTTACTTTGCTCCTTCAGTGTGCGGAGGCTGTCTCTGCTGACAATTTGGAAGAAGCTAACGAGATGTTGTTAGAGATTTCGCAACTGTCTACGCCATTCGGAACGTCAGCTCAAAGGGTAGCATCTTACTTCTCAGAAGCCATATCGGCAAGGCTAGTGAGCTCGTGCTTGGGAATATATGCCACTCTGCCAAGGGTTCCCCATGGCCATAGCCAGAGGATGGCTTGGGCCTTGCAGGTTTTCAACGGCATAAGTCCTTTTGTCAAGTTCTCGCACTTCACTGCTAACCAAGCCATACAGGAAGCATTTGAGAGGGAGGAGAGGGTGCATATCATAGATCTGGACATAATGCAGGGGCTTCAGTGGCCTGGCCTCTTTCACTTACTGGCTTCAAGACCCGGTGGACCCCCTTATGTGAGGCTCACGGGGCTTGGCACTTCCATGGAGGCTCTGGAAGCTACAGGCAAGCGTTTGTCTGACTTTGCCAATAAACTGGGACTTCCCTTTGAGTTCTTTCCGGTGGCCGAGAAAGTTGGAAACCTGGATCCGGAGAGGCTCAACGTGAGCAAGACGGAAGCTGTTGCCGTTCACTGGTTGCAACATTCCCTTTACGATGTCACAGGCAACGATACAAACACGCTCTGGCTTTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACTTAAGCCACGCAGGTTCTTTCCTGGGAAGGTTTGTGGAAGCCATACACTACTATTCAGCACTATTTGATTCACTTGGGTCAAGTTATGGGGAAGAAAGTGAGGAAAGGCATGTGGTGGAGCAGCAACTACTGTCCAGGGAGATTCGTAACGTGCTGGCCGTAGGTGGTCCGTCAAGAAGTGGAGAGCTCAAGTTGTACAACTGGAGGGAAAAGTTTCAGCAGTGTGGATTCAGAGGCATCTCTCTGGCTGGTAATGCTGCCACACAGGCCAGCCTGCTCCTTGGAATGTTTCCATCTGATGGATATACCTTGGTGGAGGATAATGGCACCCTCAGACTTGGTTGGAAAGACCTTTGCTTGCTCACTGCTTCTGCTTGGGCTTGGAGACCTCCGTTCCAAAACAGCACCATCATCACCCATCCTAGTTA 2390 0.4845 MAACALLSGGSSSTDAADTGNGTTSPLTSASNISSEEHGLHRPPGPSDRKMVRKRMASEMEVHTLPVNVHATGDYLRFPRRSAMSTTLNCSSPTADKAATTVAAASYYNCHYNYNYNVPSPNPTVTVPNYSAVTSGGNHQSQNPNPDPNPAPAVCGFSGLPLFPSERNGDNRTRNSSSTSTVEVVASATSTSMEDASATAWIDGILKDLIHSSTNVSIPQLINNVREIIYPCNPNLAVVLEYRLRLLTSTTESISNYAAAERKRTEGLPAVAVGLNQRSFNQDHQAANGYSSGLKLSRLDDIVLNMHFPDSSAASASPNQIYSNWGVSPIIALTPDGESPSVVTLLSPPLSSSNNQSYSPPPPQEKNHHQNESNNHHEEACSSPSEHGAAATTTTTDADAILTRKKKKEEMLQQKRDEEGLHLLTLLLQCAEAVSADNLEEANEMLLEISQLSTPFGTSAQRVASYFSEAISARLVSSCLGIYATLPRVPHGHSQRMAWALQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHLLASRPGGPPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGNDTNTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGELKLYNWREKFQQCGFRGISLAGNAATQASLLLGMFPSDGYTLVEDNGTLRLGWKDLCLLTASAWAWRPPFQNSTIITHPS 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00003 796 MobiDBLite consensus disorder prediction 131 151 - -
Bva01g00003 796 MobiDBLite consensus disorder prediction 7 36 - -
Bva01g00003 796 Pfam GRAS domain family 424 780 IPR005202 -
Bva01g00003 796 MobiDBLite consensus disorder prediction 338 400 - -
Bva01g00003 796 ProSiteProfiles GRAS family profile. 414 781 IPR005202 -
Bva01g00003 796 PANTHER PROTEIN SCARECROW 128 783 - -
Bva01g00003 796 MobiDBLite consensus disorder prediction 369 383 - -
Bva01g00003 796 MobiDBLite consensus disorder prediction 340 368 - -
Bva01g00003 796 Coils Coil 398 418 - -
Bva01g00003 796 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 128 783 IPR005202 -
Bva01g00003 796 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00003 Bva-Chr1 18969 22444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00003 384 783 GRAS Transcription Factor Family AT3G54220 81.592 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva01g00003 GRAS 2.4e-122 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00003 - - gmx:100803919 867.455