Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g2047 ATGTGCGCTCATCTCCATCCTTCCACCTGTTCTTCCAACACAGTTTTCTTATCTTTACCTCAACCAGCGCTTCCCTCTGCACTATCGTACAACCCTTCTGCTTGCGGAGGCCAGACAGCAAATTCCCTTGACTCGAACGCAAATGTTCAGAATTGGATCATCAAACAAGTTCGCCCTGCAACATATGAAGTAGATGCCAAAACTTCTCATGAGACTTCAGACGTGCCCACAATTTTTCACTCTGCGTGGAGTGACAGCTGGGTACATCAACTTTTGCCTAATGAAACCCCAGTGACGTTCCAAAACCAAACAAAATCCAACAAATCAATGCAATGTGAGGTTTGCAAAATTGATTGTAATAGCAAGAGTGTTTTTGAAAAGCACATATCAGGAAAGAAACACAAGAGAAATATGCAGTTGCAGAATAATTGCACTGATACAGTATTATCAGGAACCTCTTATATGAGTTCACAAATCCAAACTAGAGGGGTCCAAGGAGATGATTTATTTGTTGCTGTAGGCAGGGGGTTAGAGTCTAAGAAACTGAAGCTTTTGAGTGGTGGTGGTGCATCAGTTGATTCAGTACAGGTTTGCTTGGTATGCAACATTGCTTGCAATAGTCAAGAAGTACTGAGCACACATCTAGCTGGAAAAAAGCATGCTGCTAAGGTGAATTGTGCATTTATCAGATTTTCTATGGGTTACTTGCCATCCTGA 717 0.4198 MCAHLHPSTCSSNTVFLSLPQPALPSALSYNPSACGGQTANSLDSNANVQNWIIKQVRPATYEVDAKTSHETSDVPTIFHSAWSDSWVHQLLPNETPVTFQNQTKSNKSMQCEVCKIDCNSKSVFEKHISGKKHKRNMQLQNNCTDTVLSGTSYMSSQIQTRGVQGDDLFVAVGRGLESKKLKLLSGGGASVDSVQVCLVCNIACNSQEVLSTHLAGKKHAAKVNCAFIRFSMGYLPS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g2047 238 Gene3D Classic Zinc Finger 178 226 - -
Bisa12g2047 238 Gene3D Classic Zinc Finger 94 142 - -
Bisa12g2047 238 Pfam Zinc-finger of C2H2 type 198 220 - -
Bisa12g2047 238 Pfam Zinc-finger of C2H2 type 111 134 - -
Bisa12g2047 238 SMART ZnF_U1_5 193 227 IPR003604 GO:0003676|GO:0008270
Bisa12g2047 238 SMART ZnF_U1_5 107 141 IPR003604 GO:0003676|GO:0008270
Bisa12g2047 238 SUPERFAMILY beta-beta-alpha zinc fingers 90 140 IPR036236 -
Bisa12g2047 238 SUPERFAMILY beta-beta-alpha zinc fingers 191 225 IPR036236 -
Bisa12g2047 238 SMART c2h2final6 110 134 IPR013087 -
Bisa12g2047 238 SMART c2h2final6 196 220 IPR013087 -
Bisa12g2047 238 PANTHER ZINC FINGER PROTEIN 385B-LIKE 101 225 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g2047 112 221 C2H2 Transcription Factor Family AT5G61190 31.250 6.11e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g2047 zf-met 5.7e-07 CL0361