Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g2044 ATGGAATCCTGCAACTGCTTTGAGCCCCAATTGCCAGCTGAAGATTTATTGATGAAATACCAATATATTTCAGATTTCTTCATTGCCCTTGCTTATTTTTCTATCCCTTTAGAGCTGATTTACTTTGTAAAGAAATCAGCTGTATTTCCGTACAGATGGGTCCTCGTTCAGTTTGGTGCTTTCATAGTTCTATGTGGAGCAACACATCTAATTAGTTTATGGACTTTTACGATGCATTCAAGGACTGTGGCAGTAGTAATGACCACAGCTAAGGTTTTAACTGCCGTGGTATCATGTGCAACTGCCCTTATGCTTGTACATATCATTCCAGATTTATTAAGTGTTAAGACTAGAGAGCTATTTTTGAAGAATAAGGCTGCAGAGCTTGATAGAGAAATGGGCTTGATTCGCACACAGGAAGAAACTGGTCGACATGTTAGGATGCTGACTCACGAAATTAGAAGCACTCTTGATAGACACACCATACTAAAAACAACTCTTATTGAACTTGGTAGTACTTTGGCACTGGAAGAGTGTGCATTATGGATGCCAACTCGTACTGGCTTGGAGCTTCAACTGTCCTACACATTGAGACAGCAAAACCCAGTTGGATATACAGTACCCATACATCTTCCTGTGATCAATCAAGTATTTAGCAGCAACCGTGCAGTAAAAATTTCACCAAATTGTCCTGTGGCTAGATTACGGCCTGCAGGGAAATACATGCCTGGGGAGGTAGTTGCTGTTCGGGTCCCCCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCAGCGGTTTCATCAAGAAACTATGCTTTGATGGTCTTGATGCTTCCATCAGATAGTGCCAGACAGTGGCATGTTCATGAACTAGAGCTAGTCGAGGTTGTTGCTGATCAGGTAGCTGTTGCTCTTTCACATGCTGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCAGCTCATGGAGCAAAATGTTGCACTTGATCTGGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGCAATGATTTTTTGGCTGTTATGAATCATGAGATGAGAACTCCCATGCATGCAATTATTGCACTCTCCTCTTTGCTACAGGAAACAGAGCTGACACCTGAGCAACGTCTGATGGTTGAGACAATACTGAAAAGTAGTAATCTATTGGCTACTCTCATTAATGATGTTTTAGATCTTTCCCGGCTTGAAGATGGCAGTCTGCAACTTGATTCAGCAACATTTAACCTTCATTCTGTGTTCAGAGAGGTCCTTAACTTGATTAAACCTGTTGCATCTGTCAAAAAGCTGTCACTCACTTTACATTTAGCTCCAGAATTGCCAGTTTATGCTATTGGTGATGAAAAACGTCTCATGCAAACTATTCTTAATGTTGTTGGTAATGCTGTGAAGTTCTCAAAAGAGGGCAGTATCTCCATTACTGCCTTTGTTGCAAAAGTTGAATCCTTTAGGGATGCTAGATTTCCTGACTTTATTCCAGTGCTAAGTGATAATCACTTTTATTTGCGAGTGCAGGTAAAAGATTTAGGATCAGGAATTAATCCGCAAGATATACCTTCGTTATTCACCAAGTTTGCACATACCCAATCATTAGCAACAAAAAATTCTGGTGGAAATGGACTTGGCCTTGCAATTTGTAAGAGGTTTGTAAATCTTATGGACGGGCATATTTGGATTGAGAGTGAAGGTATTGGTAAGGGATGTACAGTTACCTTTATTGTAAAACTTGGAATCCCAGATCGATCGAATGAATCTAGACCCCCTTTTGCACCTAAAGTTCTGGGAAGTCATGGCCCAACCAACTTTGCAGGCCTCAAGGTTCTTGTCATGGATAATAATGGGGTTAGCAGAAATGTAACAAAGGGACTTCTTGTGCACCTAGGATGCGACGTTACTACAGTAAGCTCAGGCGAAGAATGCTTATCTGCTCTTTCCCATGAACACAAGATTGTCTTCATGGATGTGTGTTCGGGAATAGATGGTTATGATCTTGCAGTACATATACATGAGAAATTTGCCAAACGTCAAGATAGACCCCTCATTGTTGCTCTTACTGGAAACACCAACAAGTTCACTAAAGAGAACTGTATGAGGGTCGGAATGGATGGCCTCATATTGAAACCTGTTTCTGTGGATAAGATGAGGGGTGTTTTATCTGAACTGCTAGAGCACCGGGTTCTATTTGAAGCCATTTAA 2220 0.4108 MESCNCFEPQLPAEDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLISLWTFTMHSRTVAVVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLIELGSTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRAVKISPNCPVARLRPAGKYMPGEVVAVRVPLLHLSNFQIYDWPAVSSRNYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDSATFNLHSVFREVLNLIKPVASVKKLSLTLHLAPELPVYAIGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKVESFRDARFPDFIPVLSDNHFYLRVQVKDLGSGINPQDIPSLFTKFAHTQSLATKNSGGNGLGLAICKRFVNLMDGHIWIESEGIGKGCTVTFIVKLGIPDRSNESRPPFAPKVLGSHGPTNFAGLKVLVMDNNGVSRNVTKGLLVHLGCDVTTVSSGEECLSALSHEHKIVFMDVCSGIDGYDLAVHIHEKFAKRQDRPLIVALTGNTNKFTKENCMRVGMDGLILKPVSVDKMRGVLSELLEHRVLFEAI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g2044 739 SMART HKATPase_4 454 586 IPR003594 -
Bisa12g2044 739 Pfam GAF domain 158 306 IPR003018 GO:0005515
Bisa12g2044 739 SUPERFAMILY GAF domain-like 158 318 - -
Bisa12g2044 739 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 328 408 IPR036097 GO:0000155|GO:0007165
Bisa12g2044 739 ProSiteProfiles Response regulatory domain profile. 614 730 IPR001789 GO:0000160
Bisa12g2044 739 SMART HisKA_10 342 407 IPR003661 GO:0000155|GO:0007165
Bisa12g2044 739 Gene3D - 308 406 - -
Bisa12g2044 739 PIRSF Ethylen_sen_hybr_HK 1 737 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Bisa12g2044 739 FunFam Ethylene receptor 1 309 405 - -
Bisa12g2044 739 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 732 - -
Bisa12g2044 739 SMART gaf_1 158 316 IPR003018 GO:0005515
Bisa12g2044 739 SUPERFAMILY CheY-like 609 731 IPR011006 -
Bisa12g2044 739 PRINTS Bacterial sensor protein C-terminal signature 528 538 IPR004358 GO:0016310|GO:0016772
Bisa12g2044 739 PRINTS Bacterial sensor protein C-terminal signature 510 524 IPR004358 GO:0016310|GO:0016772
Bisa12g2044 739 PRINTS Bacterial sensor protein C-terminal signature 545 563 IPR004358 GO:0016310|GO:0016772
Bisa12g2044 739 CDD REC_ETR-like 613 726 - -
Bisa12g2044 739 FunFam Ethylene receptor 607 739 - -
Bisa12g2044 739 FunFam Ethylene receptor 1 407 589 - -
Bisa12g2044 739 CDD HisKA 340 403 IPR003661 GO:0000155|GO:0007165
Bisa12g2044 739 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 396 584 IPR036890 -
Bisa12g2044 739 Gene3D - 608 739 - -
Bisa12g2044 739 SMART REC_2 613 726 IPR001789 GO:0000160
Bisa12g2044 739 Gene3D - 136 307 IPR029016 -
Bisa12g2044 739 Gene3D - 407 591 IPR036890 -
Bisa12g2044 739 Pfam Response regulator receiver domain 615 723 IPR001789 GO:0000160
Bisa12g2044 739 FunFam Ethylene response sensor 136 307 - -
Bisa12g2044 739 Pfam His Kinase A (phospho-acceptor) domain 343 407 IPR003661 GO:0000155|GO:0007165
Bisa12g2044 739 ProSiteProfiles Histidine kinase domain profile. 349 586 IPR005467 -
Bisa12g2044 739 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 454 584 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g2044 Bisa-ChrBisa12 49467897 49488538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g2044 1 739 Miscellaneous Gene Families AT1G66340 81.536 0.0 1232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa12g2044 GAF 1.6e-13 CL0161