Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g2038 ATGCTCTGTTGGAGATTCTCTCCCAACGCAACAAACGTTCTCCCCAAGCGCGTATACCGTGGGCCGATCATTCAAGATCTCAATGCCGAAAACTCCCACGTTTGTGGCCTTTCAAGTGCGAACAATGGCCTGAACTGTTGGGGGTCGCCTGAGTTCAACGGAAATACAGTGAGAAACTTCACAAGCATAGCCGTGGGAGGGAATTTCGTCTGTGGGTTATTACAAACCGGGGAAATCAACTGCACAGGAAGTCAAAGTCAAAGTCAAAGCACGATTGTGGGCCAACGACCCAGTGGGAATTACTCTGAAATCGCTGCTGCGACCAGTCATGCTTGTGCTATCTCCTCCTCCAATGGCAGCTTGGCGTGCTGGGGTAACGTGCCAGCTGGCTCGAGTTCAACACCAACAAGTCAAGGGGGTTTCATTTCTTTGGCATTGGGAGAGAATCGAGGTTGCGCTATTCGAGCTGTGGATCGAAAAGTTGAGTGTTGGGGGACAGATAATTTCACCTTGCCGGAGAACTTGAGAGGGCAATCTTTTGAAGCGATTGCAGCAAAAGGAAGCATTTTCTGTGGAGTTAAGTCCGATGATTTCTCTTTGCATTGCTGGGGAAATGGTAATTTGGGGCCAAACAGTACCACCAAGGTGTTTGATAAGGTCCTCCCTGGGACTTGTATGAATAGTAGCCTATGTCCCTGCGGGCCACAGCCAAATTCTGCACAATTCTGTAATCAAGGATCAGTCATTTGCAAGCCTTGTACACCTTTAGCTCAAAACACCCCACAAACTCCACCTGGAGACAGTGGTTGGAGCAACAAAATGGTGGCATTCGTAGTGGTTGGAAGTGTTGGTTCGGTTTCTTTATTGCTAGTATTGGGTTTCTTCCTTTACAACTACTGCAAAGGACGAGGATGCCGGCGCGTCCATGACTCGGGCCGGTTGGATGAGCCGGGAACCGAACCGAACCAACCGGGAGCTCCGCAAACTCAAGCTGCGAATGTTCCAGTTCTTGAGAAGCGGTTGAGCCATGTAATCAGCATGGGGAATGGGGGCCATTTGGAGGAGTTTTCTCTGGAACTACTTGTCAAAGTCACAAAGAATTTCTCAGAGGATCATAAAATTGGGTCTGGCAGTTTTGGTTCGGTCTATCGAGCCACGCTTGAAGATGGGAGAGAGGTTGCCGTGAAAAGAGCTGAAATCTCACCAACCTCCTCATTATGCACCACCAAGCGCCAAAAAGACAAGGACCATGCCTTCGTGAATGAACTCGAGTCTCTATCTAGACTCAACCACAAGAACCTGGTGAGATTACTGGGTTTCTTTGAAGACAACAATGAGCGAATTCTGGTGTACGAGTTCATGAACAATGGCAGCCTAAACGACCATCTTCATCAGCTCGACGACAACTCAAGCTCTTCTCCTCTTATGTCATGGGTAGGACGAATCAAGATAGCTCTAGACGCAGCCAGAGGGTTGGAGTACCTTCACGAGTACGCCATTCCACCAATCATTCATCGAGACATCAAGTCCGCGAACATTCTGCTGGACGCTAAATGGACAGCCAAAGTGTCAGATTTCGGGCTCTCTTTAATGGGTCCAGACCCTGAAGACGAAGAGGCGCATCTTTCACTTCTAGCAGCAGGCACTGTAGGGTACATGGACCCGGAGTACTACAAGCTGCAGCACTTGACCACGAAGAGTGACGTGTACAGCTTCGGTGTGGTTCTGCTGGAACTGCTGTGTGGGTATAAAGCCATACACAGAAACGAGGACGGCATGCCAAGGAATGTGGTGGACTTCGTGGTGCCATACATTGTGCAAGACGAAATCCACAGGGTTTTGGACAGGAGGGTGCCACCCCCAACGCCATATGAGATAGAGGCTGTGGCGTTTGTGGGATATTTGGCTGCGGACTGTGTTAGATTAGAAGGAAGAGATAGGCCTTGGATGACTCGAGTCGTGAATAGCTTGGAAAGGGCATTAGCGGCTTGTTTGGCCAAACCAACATTGTCTTTGTCATCCTCCCCCGATAATTCTTCGCGCTAG 2046 0.4946 MLCWRFSPNATNVLPKRVYRGPIIQDLNAENSHVCGLSSANNGLNCWGSPEFNGNTVRNFTSIAVGGNFVCGLLQTGEINCTGSQSQSQSTIVGQRPSGNYSEIAAATSHACAISSSNGSLACWGNVPAGSSSTPTSQGGFISLALGENRGCAIRAVDRKVECWGTDNFTLPENLRGQSFEAIAAKGSIFCGVKSDDFSLHCWGNGNLGPNSTTKVFDKVLPGTCMNSSLCPCGPQPNSAQFCNQGSVICKPCTPLAQNTPQTPPGDSGWSNKMVAFVVVGSVGSVSLLLVLGFFLYNYCKGRGCRRVHDSGRLDEPGTEPNQPGAPQTQAANVPVLEKRLSHVISMGNGGHLEEFSLELLVKVTKNFSEDHKIGSGSFGSVYRATLEDGREVAVKRAEISPTSSLCTTKRQKDKDHAFVNELESLSRLNHKNLVRLLGFFEDNNERILVYEFMNNGSLNDHLHQLDDNSSSSPLMSWVGRIKIALDAARGLEYLHEYAIPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYKLQHLTTKSDVYSFGVVLLELLCGYKAIHRNEDGMPRNVVDFVVPYIVQDEIHRVLDRRVPPPTPYEIEAVAFVGYLAADCVRLEGRDRPWMTRVVNSLERALAACLAKPTLSLSSSPDNSSR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g2038 681 Gene3D Phosphorylase Kinase; domain 1 332 453 - -
Bisa12g2038 681 Pfam Protein kinase domain 369 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g2038 681 Gene3D - 3 97 IPR009091 -
Bisa12g2038 681 SMART serkin_6 368 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g2038 681 Gene3D Transferase(Phosphotransferase) domain 1 454 667 - -
Bisa12g2038 681 CDD STKc_IRAK 374 659 - -
Bisa12g2038 681 ProSiteProfiles Protein kinase domain profile. 368 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g2038 681 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 97 671 IPR044815 GO:0004674
Bisa12g2038 681 SUPERFAMILY Protein kinase-like (PK-like) 345 657 IPR011009 -
Bisa12g2038 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Bisa12g2038 681 MobiDBLite consensus disorder prediction 311 330 - -
Bisa12g2038 681 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Bisa12g2038 681 FunFam PTI1-like tyrosine-protein kinase 3 454 667 - -
Bisa12g2038 681 SUPERFAMILY RCC1/BLIP-II 15 214 IPR009091 -
Bisa12g2038 681 Gene3D - 98 229 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g2038 Bisa-ChrBisa12 49228014 49230059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g2038 1 668 Receptor kinase-like Gene Family AT5G47850 52.047 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Bisa12g2038 Pkinase 8.4e-45 CL0016