Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g2028 ATGACGGATACTAGCCAACTCCCCTGCGATGGTGCTGGCGTCTGTATGATCTGCAAGGTGAAACCGCTGGAGGAAGAGATGCTCACATGCAAAACCTGCGGCAGCCAATGGCATGTAGGCTGTCTCTCTCCGCCTCCGGCAACGATGGCGGAGACCCTTCAGTGGGAGTGCCCTGACTGCTCCTCACCGACCTTCGAAGTTCCCGCGGTGGCCGTCGGCAAGGTATTTCTCGGCGGAGCAGGTGGAGACGGGTCCAGCGACTTGATGGCCGCGATTCGAGCGATTGAGGCCGATGCTTCTCTTACGGAGCTGGAGAAGGCCAAGAAACGTCAACAGTTGATGAGCGGAAAGGCTGCTGCGTCGGAAGAGGACGAATGTGAAGGGAGGGAGAAAGAGGTGCTGGATATTCTTAATGGGACTCTAAATTGCTCCTTCTGTATGCAGCTACCCGAGAGGCCTGTGACGACTCCATGTGGCCATAATTTCTGCCTAAAATGCTTTAAAAAATGGATTGGGCAAGGAAAACAAACATGTGCAAAGTGTCGACGCACTATCCCTTCCAAAATGACAAGCCAGCCACGTATCAATTCTACACTTGTGTTTGCTATTCGTATGGCAAAAGCATCCAAAAATATTGCAGCAGGAGAAGCCTCTAAAGTTTACCATTTTGTACATAACCAAGATAGACCAGATAAGGCATATACTACGGAGCGTGCCAAAAGGAAAGGCAAATCAAATGCAGCAAGCGGGAAAATTTTTGTAACTGTGCCTCAGGATCATTTTGGTCCAATCTCAGCTGAAAATGATCCAGTGCGAAATCAGGGTGTGCTGGTCGGCGAATGTTGGGAAGATAGGCTTGAATGCCGGCAATGGGGTGTCCACTTCCCACATGTTAGTGGCATTGCTGGACAGTCAAGTTATGGTGCACAATCAGTAGTTCTTTCAGGCGGTTATGTTGATGATGAGGATCATGGAGAGTGGTTTCTTTATACCGGAAGTGGCGGTAGAGACTTAAGTGGCAATAAACGCACAAGCAAAACTCAATCTTTTGACCAAAGATTTGAGAAGTACAACCTAGCTCTAAAAGTTAGTTGTATAAAGGGCTATCCAGTTCGAGTTGTAAGATCTTACAAAGAGAAGCGTTCCTCATACGCCCCTGAGAAAGGATTACGCTATGATGGTGTTTATAGAATTGAGAAATGTTGGCAGAAAGTGGGGTTGCAGGGTTTCAAGGTTTGCCGATATTTGTTTGTTAGATGTGACAATGAACCTGCCCCCTGGACAACTGATGATAATGGTGATCGCCCTAGACCATTGCCAGTAATTTCTGAGTTGAAGATGGCTGTAGCCTTAACTGAAAGGAGGCAGAGTCCATTTTGGGATTTTGATGAGGAAGATTCTCGGTGGAAGTGGAAGAAACCACCACCTCCTAGCCAAAGACAGGGAAAAAGCAGGGTCCCTTGTGAGATAGGAAAGTCAAGGAAGGTAACGAAAGGCAATATTTCAATCAAGGACATATTGCTGAGAGAATTCAGTTGCCTTATATGCAAGCAAGTTATGGTTTCTCCTGTGACAGCACCTTGTGCTCATAATTTCTGCAAGTCATGTTTGGAAGAGGCATTTGTGGGCCAGGCTTTCGTGAGAGACAGAAGCAGGGGTGGAAGATTGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCGGTTTGCCCTATCGACATCTCTGATTTTCTTCAGAACCTTCAGATTAATACAGAGTTGATGGGTGTAATTGAGTCATTGAAAGCAAAGGTTGAAGAAAATGGAGATTCTGTGGAGTTAAGTGAGGATGCAGATGGAGCAGAGGAAGACTGTGATGAAACTGTTGCTGGAATGGATGAAGAGACAGTTGACGGTGGTGCTTGCTTTCAAAAGAATGATGAAGATGAAGAAAACTTGGTAAAAAAGCTTGATGATTCTCTGGGAGGATTTGATGTCAGTGGACATCAGCTAGGAGAACTCGTAGAAGACAATGAGGTGCCAGATCCTGAGACCAAGTGCGATACAAAGAGAAAGAGAGCCAACTTTAAAGATCTTTTGCCTAAAAGGCGTGATGGTAAAAGGGCTAGAAAAGACAGAAAGGCTGAGGATAAAGGAAATAATTCACCATCAAGTTCTCTGCCACTGCTATCAGATCATGACACAGAATTTTAA 2190 0.4589 MTDTSQLPCDGAGVCMICKVKPLEEEMLTCKTCGSQWHVGCLSPPPATMAETLQWECPDCSSPTFEVPAVAVGKVFLGGAGGDGSSDLMAAIRAIEADASLTELEKAKKRQQLMSGKAAASEEDECEGREKEVLDILNGTLNCSFCMQLPERPVTTPCGHNFCLKCFKKWIGQGKQTCAKCRRTIPSKMTSQPRINSTLVFAIRMAKASKNIAAGEASKVYHFVHNQDRPDKAYTTERAKRKGKSNAASGKIFVTVPQDHFGPISAENDPVRNQGVLVGECWEDRLECRQWGVHFPHVSGIAGQSSYGAQSVVLSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTSKTQSFDQRFEKYNLALKVSCIKGYPVRVVRSYKEKRSSYAPEKGLRYDGVYRIEKCWQKVGLQGFKVCRYLFVRCDNEPAPWTTDDNGDRPRPLPVISELKMAVALTERRQSPFWDFDEEDSRWKWKKPPPPSQRQGKSRVPCEIGKSRKVTKGNISIKDILLREFSCLICKQVMVSPVTAPCAHNFCKSCLEEAFVGQAFVRDRSRGGRLLRSQKNVMKCPVCPIDISDFLQNLQINTELMGVIESLKAKVEENGDSVELSEDADGAEEDCDETVAGMDEETVDGGACFQKNDEDEENLVKKLDDSLGGFDVSGHQLGELVEDNEVPDPETKCDTKRKRANFKDLLPKRRDGKRARKDRKAEDKGNNSPSSSLPLLSDHDTEF 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g2028 729 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Bisa12g2028 729 ProSitePatterns Zinc finger RING-type signature. 528 537 IPR017907 -
Bisa12g2028 729 Gene3D - 242 440 IPR036987 -
Bisa12g2028 729 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Bisa12g2028 729 MobiDBLite consensus disorder prediction 712 729 - -
Bisa12g2028 729 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Bisa12g2028 729 SMART G9a_1 266 423 IPR003105 -
Bisa12g2028 729 MobiDBLite consensus disorder prediction 467 487 - -
Bisa12g2028 729 Pfam SAD/SRA domain 274 422 IPR003105 -
Bisa12g2028 729 MobiDBLite consensus disorder prediction 671 729 - -
Bisa12g2028 729 ProSiteProfiles Zinc finger RING-type profile. 513 569 IPR001841 -
Bisa12g2028 729 SUPERFAMILY RING/U-box 506 594 - -
Bisa12g2028 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 62 IPR013083 -
Bisa12g2028 729 SMART PHD_3 14 61 IPR001965 -
Bisa12g2028 729 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Bisa12g2028 729 SUPERFAMILY PUA domain-like 246 440 IPR015947 -
Bisa12g2028 729 SMART ring_2 143 181 IPR001841 -
Bisa12g2028 729 SMART ring_2 15 60 IPR001841 -
Bisa12g2028 729 SMART ring_2 513 569 IPR001841 -
Bisa12g2028 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 209 IPR013083 -
Bisa12g2028 729 SUPERFAMILY RING/U-box 135 189 - -
Bisa12g2028 729 Pfam RING-type zinc-finger 513 567 IPR027370 -
Bisa12g2028 729 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Bisa12g2028 729 Pfam PHD-finger 14 62 IPR019787 -
Bisa12g2028 729 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 603 IPR045134 -
Bisa12g2028 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 613 IPR013083 -
Bisa12g2028 729 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 94 210 - -
Bisa12g2028 729 CDD RING-HC_ORTHRUS_rpt1 141 186 IPR047498 -
Bisa12g2028 729 SUPERFAMILY FYVE/PHD zinc finger 4 64 IPR011011 -
Bisa12g2028 729 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Bisa12g2028 729 MobiDBLite consensus disorder prediction 671 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g2028 Bisa-ChrBisa12 48888361 48895115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g2028 1 604 C2H2 Transcription Factor Family AT5G39550 60.297 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa12g2028 SAD_SRA 2e-52 CL0178