Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g2001 ATGACTCCAGCGAATTTGTCAGGGCAGTTTGGTGACACAACATACACCAAGGTGTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAGTATTTTGAGCAGTTTGGTGAGATCTTGGAGGCTGTCGTCATCACTGACAAAGCCACCGGCAAATCTAAAGGCTATGGCTTTGTAACTTTCCGGGAACCAGAAGCCGCCATGAGAGCATGTGTGGATGCTGCTCCTGTGATAGATGGTAGGAGGGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCATCAACTCCAAAACATGGAGGAGGAGGAAGGAATTTTAGGGTTATGGGTTCGTTCCAGACAGGCTTCGGAGGAGGGGTAGGATCGACTTTTCCATCAGCAGCAACACTCCCTCATTATGCCATCCAGCAAGGGACACCATATAATGTTTATGGGTACTCTCCTTACTCACCGGATTACACTTACCCGACGGGCTACTATAGTGTGTATGGAGGAGCAACCCAGTACCCACTGTACGGCACCGGACCAGGCGGCATGATGACCAGTGCTGCGGCGGCCGCCACCGCCATTTACCCGTATCTCCAGTTCGGAGAAGGGAGTGGCGGCAGCGGCGTGACCGGCGGCTATACTTCCGGCCAGGGTTACGGAGTGTACTACCCGCCCCAGCTGTTTCAGTATTCTCCCATTACTTCATCTGCTGGTTATGGACAGCACTATGGTCCACCCATGTCTCTTGCACCTTCGCCTGCTTTGCAATCAGGCGTGAAGATGGCTCTTCAAGCTCCAATTCCTCATCGTTAG 819 0.5226 MTPANLSGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSTFPSAATLPHYAIQQGTPYNVYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPGGMMTSAAAAATAIYPYLQFGEGSGGSGVTGGYTSGQGYGVYYPPQLFQYSPITSSAGYGQHYGPPMSLAPSPALQSGVKMALQAPIPHR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g2001 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Bisa12g2001 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Bisa12g2001 272 PANTHER BOULE-RELATED 4 249 - -
Bisa12g2001 272 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Bisa12g2001 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Bisa12g2001 272 CDD RRM_RBM24_RBM38_like 16 91 - -
Bisa12g2001 272 Gene3D - 3 112 IPR012677 -
Bisa12g2001 272 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g2001 Bisa-ChrBisa12 48059528 48067077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g2001 1 92 C2H2 Transcription Factor Family AT2G19380 39.130 1.19e-13 68.9