Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1999 ATGGTGGTGAATGAGAGGCCGACTAAGAGAATGAAGAGGAGGGTCTCGGCTGATCTCTACGACTTTCTTACTTTTCCGGACGCCGGAGACCGTAGCTGCGACGGCGTGGCCGCCGCCGGCGAACCCTTCCGTAAAGCCGTTCAGCGTTTCTTAACTAACCACGCGCGCCTCACCTTCCCTCCATCGCTCTTCCCCTCCCTCATGACGTGGCAGATCTTGTTCCGGATCGGTGGGCTCGTGGACGGGCCTGATCTCTCCCCGGCGATGGTCACCCTCGACATTGTGGAGGAGGACGTTACTAGATCTCGAAGTTCAGTCTACTGCGACCAGTGCCGAGTCGTTGGATGGAGTGGCCATCCGGTGTGTCGAAAGCGATATCATTTCATAATAAGGGCTGCAAGTAATCACATGGAAGCTTATCAAAGACCGTGTTCGAGGTGTGGGAATTCCATTCAATTATCTGAACCAAGGTGCAAATGGTGTAGCAATGTGATTACCGTCGATGATCTTGAGGATTGGGTGTATGTTCAAATTGAAGATAACACTCATCTTCTGCACGGTATTGTTCACTCCAATGGTTATGGCCACCTGCTTACTCTTAATGGAAGAGAAGGTGGCTCAGAGCTTCTATCTGGGTCAGACATCATGGGTTTCTGGGATAGGCTCTGTGTTTCACTTGCTGTTAGGAAGGTTAGTGTGATGGATTTGTCTAAGAAATTTGGGCTTGAATATCGATTGCTTCATGCAATTACCAAAGGGTGTTCTTGGTATGGTAATTGGGGTTATGAATTTGGGACAGGCAGCTATGCTCTAACTCAAGATTTGTACCAGAAAGCGGTGAATACTTTATCAAGCATGCCGTTATCCAATTTATTATTCCAAGGTCGTGGCACTCGAAACCGCCTGCAGTGTGTGATTTCTCTTTATCAGTCTTTGGCAGATACTGAACTTCTGACTATCAAAGATCTATTCTCCTTTTTGGTGACGTTGATTTACCAGTTCCGGAAGATCTTGACCACAAGAACATCTAATCCGCATGAATCTACTGGAACTTGTAATGTATTGTGTGCTTGGACAAGGGATGATGTTGAAGCTGTGCAACAGGCTTTGATTAAGGTACTGCTTGCATCAGCTGCCTCTAGCGGGGCCAAATGGGTGACAAGACGTGCTCTCAAGGGTGCAATATGTAGAGGTGTTGAGTCTCCTGAGCTTCTAGACTACAGTCTTAAACATTTGGGTGGGAAACTAGCTGCCAATGGCATGGTAGTTAGATCACGATGCAATCCCAATTCTAGTGCTGTTGAGTTCAGTCTTGAAACTGTGACTATTATGGAAAATGCGGTTGGTGCAAATTCAAGTTATCCGTCAGAAGAGCAAGTGATCTCTGATCTGAAATACTTATTTGATTCAATCATTCATCCTGAAAGGATGGTGAGCTACAGACCTAGTATTATGAGGAAACGAGTGGCTGATTCGGCAAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACGAGCGTGATAAGATAGCAGCAGCAGCAGAACTTCCTCGATCCATCAGGCTGTGGTGTCATGTGGAGCTTTCAGATCAGCCTAAAGATGACCCAACCCCACCTCCAGAACTAGTTGTGCTGCCCTTGAATGCTACTGTTGCTGACCTTAAGAATGAGGCGACTAATACTTTTCAAGAAGTATATGCGATGTATAAGAGGTTTCAAGCTGAGGAACTTCTAGATTATGGATCTATCAAGGATAACCTCACTGTAAAATTCCTCCTTGGAACAAGTGGGTCAGTTCGAATTCTAGGTAAGTGCCCTGCAAAACATGGGCTGAACCGTTTCCGAATGGAAAGAGGGACAGAGACGTGGAAAGTTGATTGCCCTTGTGGGGCTAAGGATGATGATGGCGAAAGAATGCTGGCATGTGATACCTGTGGTGTTTGGCAGCATACCAGATGCGCTGGAATTGACGATTCTAATGCTATTCCTTCGAAGTTTGTTTGCATGAGATGCATCAACTCATACCGTAAGGAAGCCAAGAAACTGCCTGACTCTGTTGATGAAGCTTCTTGCAAACCAAACACTTCTTGCAGGGGTGAAGTGGTGGCAACTGATACCCCTGCTGTAGCTTGTAACATGACTCTGAATTTTGGTGTACGTTGA 2166 0.464 MVVNERPTKRMKRRVSADLYDFLTFPDAGDRSCDGVAAAGEPFRKAVQRFLTNHARLTFPPSLFPSLMTWQILFRIGGLVDGPDLSPAMVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNHMEAYQRPCSRCGNSIQLSEPRCKWCSNVITVDDLEDWVYVQIEDNTHLLHGIVHSNGYGHLLTLNGREGGSELLSGSDIMGFWDRLCVSLAVRKVSVMDLSKKFGLEYRLLHAITKGCSWYGNWGYEFGTGSYALTQDLYQKAVNTLSSMPLSNLLFQGRGTRNRLQCVISLYQSLADTELLTIKDLFSFLVTLIYQFRKILTTRTSNPHESTGTCNVLCAWTRDDVEAVQQALIKVLLASAASSGAKWVTRRALKGAICRGVESPELLDYSLKHLGGKLAANGMVVRSRCNPNSSAVEFSLETVTIMENAVGANSSYPSEEQVISDLKYLFDSIIHPERMVSYRPSIMRKRVADSARKLLDCKQFMKDYERDKIAAAAELPRSIRLWCHVELSDQPKDDPTPPPELVVLPLNATVADLKNEATNTFQEVYAMYKRFQAEELLDYGSIKDNLTVKFLLGTSGSVRILGKCPAKHGLNRFRMERGTETWKVDCPCGAKDDDGERMLACDTCGVWQHTRCAGIDDSNAIPSKFVCMRCINSYRKEAKKLPDSVDEASCKPNTSCRGEVVATDTPAVACNMTLNFGVR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1999 721 SUPERFAMILY FYVE/PHD zinc finger 618 676 IPR011011 -
Bisa12g1999 721 ProSitePatterns Zinc finger PHD-type signature. 628 672 IPR019786 -
Bisa12g1999 721 CDD PHD_MMD1_like 627 672 - -
Bisa12g1999 721 SMART PHD_3 627 673 IPR001965 -
Bisa12g1999 721 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 681 - -
Bisa12g1999 721 Pfam PHD-finger 628 674 IPR019787 -
Bisa12g1999 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 679 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1999 Bisa-ChrBisa12 48010111 48013038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1999 86 672 PHD Transcription Factor Family AT5G22260 29.805 3.96e-90 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa12g1999 PHD 2e-09 CL0390