Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1996 ATGGGTTCTTCGAACGGCGGTGTGCCGCCGGGGTTTCGATTTCATCCAACGGACGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTGTCGTTTCAGAAGTTTGACATGGACGTCATTAGAGAAGTCGACTTGAACAAGATTGAGCCTTGGGACTTGCAAGAAAGGTGTAGAATAGGATCAACACCACAGAACGAGTGGTACTTCTTCAGCCACAAGGACAGGAAGTACCCAACAGGGTCAAGGACCAACAGGGCCACAAGCGCAGGGTTCTGGAAGGCCACAGGGAGAGACAAGTGCATCAGAAACACCTTCAAGAAGATCGGCATGAGGAAGACCCTCGTCTTCTACAGAGGTCGAGCTCCTCACGGCCAAAAGACCGACTGGATCATGCACGAATACCGCCTTGAAGACGCCGACGATCATCCTCAATCAAACCCTAATGATGATGGCTGGGTGATTTGCAGGGTGTTCAAGAAGAAGAATCTGTTCAAGATTGGCAATGAGGGTGGGTCCATGCATAATTCAGACCAACAGCTCAACAATTCCTCAAGCATCAATCATCCTCGCTCCTTCATGCATAGAGAAAGCCAGTACTTACTACATCATCATCAACAACAACAACAGCAAAATCCCAGAAGCTTCGAGCTTGATAAACCTGAGCTCGCACTTCACTATCCTCCTCACCTACAAAACCCTCATCAATACTCCCTCTTCCAAGCTCAATCCCTTCTTCCAACCCACAAGCCCATGCCCTATGATTACAACTCATATCCATCAACCCTACCCTCCGACTCACCTGCCATAGCTGCCAAACAACTCATGACAAACCCCAGAGACTGTGAAAGTGGAAGTGAGGGATTGAGGTACCAAGTAAACGAGTCGGCCGGCAATGTGGAGGTCGGCACGTGTGAGCCGGCGGCTCAAGAGATGGGAGCAGGAAGAGACCATGACCAAGGGATAAGTGAATGGGGTGTGCTTGATAGGCTTGTTGCCACCTCTCATATTGGAAATGAAGAGTCCTCCAAAGGGGTTAGGTTTGAGGATGAAAATGCACCATCTGTTCACCAGATCAACCACCTCTCATTGCGTGGAGAAATGGACTTTTGGGGCTATGCTGGAAAATAA 1128 0.4894 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKIEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRNTFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLEDADDHPQSNPNDDGWVICRVFKKKNLFKIGNEGGSMHNSDQQLNNSSSINHPRSFMHRESQYLLHHHQQQQQQNPRSFELDKPELALHYPPHLQNPHQYSLFQAQSLLPTHKPMPYDYNSYPSTLPSDSPAIAAKQLMTNPRDCESGSEGLRYQVNESAGNVEVGTCEPAAQEMGAGRDHDQGISEWGVLDRLVATSHIGNEESSKGVRFEDENAPSVHQINHLSLRGEMDFWGYAGK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1996 375 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Bisa12g1996 375 FunFam NAC domain-containing protein 17 164 - -
Bisa12g1996 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 225 - -
Bisa12g1996 375 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Bisa12g1996 375 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Bisa12g1996 375 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1996 Bisa-ChrBisa12 47967197 47971330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1996 1 371 NAC Transcription Factor Family AT1G33280 54.521 2.55e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bisa12g1996 NAM 3.3e-37 No_clan