Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1969 ATGAAATCTCTTGTGGTGTTTTCTGTTTTAATGTTTACCGCTTCCTACTCTTTTTTCTATGATGAATATGTGAAAGAACAACCAGACGCATACGGCATCCTCTCGAATTCTGCATTTGCCTTCATGTCACTTTGCTTCTCAAGGAAATTGGAGATTGGATTTGAAGCGGGTTTCCTCCAATTTTTCCTTCAAAACCTCACTATACAATTGATGGAGATCAACTGGACTCTGACTTTAGTAGCAGCAGTTTACTGCTGTTTCCTTATCAGTTTTTGCTACTATTTAGATTCCCAACAAGATAATAAAGCCCCTGGTATTGAAGATGGTCTTCCACTCTATAGGTCTCCAAATGGACAGACTCAGCCATCCCCAAGTATTGGAGAGTTTTCACATGGAAGCATATCCAGAGACAGTCAACAAAATGGTGAAAACTACAAGCCTGAATCCTACACCCTACTGGATCAGAAGGTTTTAGAAAGTCCAACACCCTACTGGATCCCAAAGCCCAGCAGAGGATGCGGGCACAAAAACTGCAGTAGTCAATCTCTCCTGGAGTATTTACCAAGAGAAGTGCGAACGCCGACTGTCCTGATGAAGTACGTCCGGGTGAGGAGGATGGACGATGGGGACGAGGAGGGCGCATACCAGGCGACTGTGAAGGTTGCAGGCCTTGTGTTCAAAGGGTTTTTGTATGGTCAATGCGTTGAGGATGGAGATAGCTATCCTAATTTAACGGAGCTTCCTTTAGGCCATGGCAGCGCCGGAGGACCCGAGGAAACTGGCGCCAGTGGCAGTGGCGAGGTCAGGAGAGACGGAGCCAGTTCTTCATCCCCAACGTTGGATCCTTCTGATGTTTTTGCTGCCTTTTCAGATGACGATACTTCAGAAAACAATGTGGCAATAGTTGACAATGGCTGGAAGCAGACCGCGTCAGATTCGCAACACTTGCAATTGAGAAGAAGCAATACATCCAATGTATACTTTAAAACGGCGTCGTTCAGAACGAGAAGGCAAACTGAAAAAGACGGGGAAAGTGGCAATGTTGGCTGTGGCGGAGGCACTTATTCATCCCCAATGCTGGATCATTCTGATGTTTCTACTGCCCCTTCAGATTCACAGCAGCGATTGGGAAGACGAAGAAGAGCGAAAGCCAATCTAAAGAAGTTCGAAGAAGATCTGAAAGGAGGACTGGAAACCGCTTTTTTCGTAGTGCCAAAGTTCAAGAGAAAAGTCATTTGCCGTTAA 1245 0.457 MKSLVVFSVLMFTASYSFFYDEYVKEQPDAYGILSNSAFAFMSLCFSRKLEIGFEAGFLQFFLQNLTIQLMEINWTLTLVAAVYCCFLISFCYYLDSQQDNKAPGIEDGLPLYRSPNGQTQPSPSIGEFSHGSISRDSQQNGENYKPESYTLLDQKVLESPTPYWIPKPSRGCGHKNCSSQSLLEYLPREVRTPTVLMKYVRVRRMDDGDEEGAYQATVKVAGLVFKGFLYGQCVEDGDSYPNLTELPLGHGSAGGPEETGASGSGEVRRDGASSSSPTLDPSDVFAAFSDDDTSENNVAIVDNGWKQTASDSQHLQLRRSNTSNVYFKTASFRTRRQTEKDGESGNVGCGGGTYSSPMLDHSDVSTAPSDSQQRLGRRRRAKANLKKFEEDLKGGLETAFFVVPKFKRKVICR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1969 414 MobiDBLite consensus disorder prediction 359 373 - -
Bisa12g1969 414 NCBIfam LRP1 C-terminal domain 187 233 IPR006511 -
Bisa12g1969 414 Pfam Domain of unknown function (DUF702) 180 236 - -
Bisa12g1969 414 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 177 288 IPR007818 GO:0003700|GO:0006355
Bisa12g1969 414 MobiDBLite consensus disorder prediction 114 146 - -
Bisa12g1969 414 MobiDBLite consensus disorder prediction 107 146 - -
Bisa12g1969 414 MobiDBLite consensus disorder prediction 245 291 - -
Bisa12g1969 414 MobiDBLite consensus disorder prediction 334 382 - -
Bisa12g1969 414 MobiDBLite consensus disorder prediction 269 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1969 Bisa-ChrBisa12 46873215 46877160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1969 185 286 C2H2 Transcription Factor Family AT5G12330 43.137 6.35e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Bisa12g1969 DUF702 1.8e-11 No_clan