Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1957 ATGCCTTCTTCAAGCGCTGGCGCTTCATCTTCTCCCTACAGAGGTGTTCGCAAGAGGAAGTGGGGAAAATGGGTGTCTGAAATCCGCGAGCCAGGCACCAAGACCAGAATTTGGCTAGGCAGCTTTGAGACGCCGGAGATGGCAGCCGCGGCATACGACGTCGCCGCCCTGCACTTCCGAGGCCGCGAGGCGAGGCTCAACTTCCCGGAGCTGGCCACCGCCCTCCCTCGCCCGGCGAGCAACAATGGCGACGACATTCGCATGGCCGCACATGAGGCAGCCTTGAGGCTCAGGACCAACACTGTGGTGGCCGGAGAAGGAGGCGGGACCGGCGGGTGCTCTGTGGCTACCGCCACGGCGGTGGCGCCGGTCACCGTGAGGCTGTCGCCGACGCAGATCCAGGCGATCAATGACTCGCCACTGGACTCACCCAAGATGTGGATGCAAATGTCTGAGACCCTCATGCTGGAGGAACAGTCCATGATGTTTGAGGACAACGAGTGGGAGGATATGCACAGACACAGTGATTCCCTTTGGGATCCTTAG 546 0.6117 MPSSSAGASSSPYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELATALPRPASNNGDDIRMAAHEAALRLRTNTVVAGEGGGTGGCSVATATAVAPVTVRLSPTQIQAINDSPLDSPKMWMQMSETLMLEEQSMMFEDNEWEDMHRHSDSLWDP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1957 181 FunFam Ethylene-responsive transcription factor 2 11 70 - -
Bisa12g1957 181 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Bisa12g1957 181 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Bisa12g1957 181 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Bisa12g1957 181 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Bisa12g1957 181 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Bisa12g1957 181 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Bisa12g1957 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 134 - -
Bisa12g1957 181 SUPERFAMILY DNA-binding domain 11 70 IPR016177 GO:0003677
Bisa12g1957 181 Pfam AP2 domain 13 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1957 Bisa-ChrBisa12 46116358 46116903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1957 11 181 AP2-EREBP Transcription Factor Family AT1G71450 61.628 1.91e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa12g1957 AP2 3.4e-13 CL0081