Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1939 ATGGAAGCTGTGAAGAAGGGGCCATGGACACCAGAAGAGGATAGAATACTGGTGGATTACATTCAGAAGCATGGATATGGGAGCTGGAGAGCACTTCCAAAGCTTGCAGGATTGAACAGATGTCATTTACCTGGAAGAACTGACAATGAAATCAAGAACTTCTGGAACACTCATTTGAAGAAAAAGCTTCTGCAAATGGGATTAGACCCCGTGACTCACCGTCCTAGATCAGACAACAATAACCATCTCAATCTTCTATCAAATCTTCAACAATTGCTTCACAGTTTCACAACACACATTTCTCCTAATTGGGACATTAACAATATTAATAATGCTCTAACAGACCCCACACAACTACACAAACTCCAAGTCTTACAGAACGTACTTCAAGTCCTCTCCACTCCTGTTGATTTTTCAGTTTCCCACGGATATTCTTCACCGGAAGCAATTTTGCTCGAGACACTGTCGAACACTACTTTTAACTTGGAGGCAACGGACCATCCTCTATATGAACTACTAAGAGGAGGACTAAACAATTCTATGCTTGAAGGTGTCCATAATTATGAGGGTTCAGTTGGAAATTTTGCTTCCAATTTGCCACAACCACTAAGTGACTGTGATTTTCTTCATAAGATGGCACGTTTGGCTCCAGCGTCGACGTCGTCTTCGAGTTCTCTTCCTAATCTGGTTTCGGTCGCACCTGATTCGTCCCCATCAGTGAAGAAAATGAAGAGGATGGTAGATTACCAAGACGAGGACTGTAAGAATAATAATAAACATAATCCTCCTTCTACTTCAAGAGACTTTCAAACTTGGGCAGGTTTTATGGATGAGGAAGCAAGCGATGCTTATTGGAAAGATCTCATAAAGTAA 873 0.4147 MEAVKKGPWTPEEDRILVDYIQKHGYGSWRALPKLAGLNRCHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDNNNHLNLLSNLQQLLHSFTTHISPNWDINNINNALTDPTQLHKLQVLQNVLQVLSTPVDFSVSHGYSSPEAILLETLSNTTFNLEATDHPLYELLRGGLNNSMLEGVHNYEGSVGNFASNLPQPLSDCDFLHKMARLAPASTSSSSSLPNLVSVAPDSSPSVKKMKRMVDYQDEDCKNNNKHNPPSTSRDFQTWAGFMDEEASDAYWKDLIK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1939 290 CDD SANT 8 59 IPR001005 -
Bisa12g1939 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 192 - -
Bisa12g1939 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 63 IPR017930 -
Bisa12g1939 290 Gene3D - 4 64 - -
Bisa12g1939 290 ProSiteProfiles Myb-like domain profile. 1 59 IPR001005 -
Bisa12g1939 290 Pfam Myb-like DNA-binding domain 6 59 IPR001005 -
Bisa12g1939 290 SMART sant 5 61 IPR001005 -
Bisa12g1939 290 MobiDBLite consensus disorder prediction 221 235 - -
Bisa12g1939 290 SUPERFAMILY Homeodomain-like 4 68 IPR009057 -
Bisa12g1939 290 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1939 Bisa-ChrBisa12 45525200 45527111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1939 3 290 MYB Transcription Factor Family AT5G16770 34.911 1.07e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa12g1939 Myb_DNA-binding 1.7e-14 CL0123