Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1912 ATGGCTCGCGGAAAAGTTCAGATGAAGAGAATAGAGAACCCGGTGCACAGACAAGTGACCTTCTGCAAGCGCCGAGCGGGGCTCCTGAAGAAGGCTAAGGAGCTGTCTGTGCTGTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCCCACGGCAAGCTCTATGAATTGGCCACCAACGGAACCATGCAAGGGATAGTGGAGAGGTACATGAAGTTCACCCGTGGGGCTCAGCCTGAAGCAGCCATCAGTGAAAAACATCCTCTGGATGCCAAAGAGGAGATCAATGTGCTAAAACAGGAAATTGGAACTTGGCAACATGGTCTCAGGTATTTATTTGGAGATGGAATTGAGACAATGACAATGGACGAATTACAAGTATTGGAGAAGTATCTGGAAATGTGGATCTATCATATTCGTTCAATGAAGATGAACAACATGTTGCAGGAAATACAAACACTGAAAAATAAGGAGGGAATACTCAAAGCCGCAAATAAGTATCTCCAAGATAAGGTAGTGGAGAATACAGAAATTACTAACTTTGGACCATTTGCTACTGATACTTCATATCCACTAATTGTACAAGATGAAATATTTCAGTTCTAG 606 0.4356 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATNGTMQGIVERYMKFTRGAQPEAAISEKHPLDAKEEINVLKQEIGTWQHGLRYLFGDGIETMTMDELQVLEKYLEMWIYHIRSMKMNNMLQEIQTLKNKEGILKAANKYLQDKVVENTEITNFGPFATDTSYPLIVQDEIFQF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1912 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa12g1912 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa12g1912 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa12g1912 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa12g1912 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa12g1912 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 146 - -
Bisa12g1912 201 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Bisa12g1912 201 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa12g1912 201 Pfam K-box region 90 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa12g1912 201 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa12g1912 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bisa12g1912 201 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Bisa12g1912 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1912 Bisa-ChrBisa12 44303598 44310194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1912 1 201 MADS-box Gene Family AT1G71692 59.716 1.57e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa12g1912 K-box 1e-21 No_clan