Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1897 ATGGGAAGAGGAAAGATCGAGATCAAGAGGATAGAGAACACAACGAACAGACAGGTAACGTTCTGCAAGCGAAGGAATGGGCTTTTGAAGAAGGCTTATGAGCTATCTGTCCTCTGTGATGCTGAAGTTTGCCTCATCGTCTTCTCAACTCGTGGCCGCCTCTATGAGTACTCTAACAACAACATAAGGTCTACGATAGAGAAGTACAAAAAAGCTTGTTCAGATAATTCAAGTGCAAGCTCTATAACTGAAATCAATGCTCAGTACTATCAGCAAGAATCTGCAAAGCTGCGACAGCAAATTCAGATGCTGCAAAATTCCAATAGGCACTTGATGGGTGATGCGTTGAGCACACTGACTGTGAAGGAACTTAAGCAGCTGGAAAATAGACTTGAAAGAGGAATCTCTAGAATTAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAAATTGAATATTTGCAAAAAAGGGAGATTGAACTAGAAAACGAAAATCTTTGCCTTCGGACTAAGATAGCCGAAGTAGAGAGGATTCAGCAAGCAAACATGGTTTCTGGACAAGATCAGCTGAATGCGATGCATGCATTGGCTTCTCGCAACTTCTTCAATCCAGCCATCATTGAACCTTCTGCAGCTCCCTACCCTCAATCTGACAAGAAGATGCTTCATCTTGGGTGA 675 0.4296 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVCLIVFSTRGRLYEYSNNNIRSTIEKYKKACSDNSSASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYLQKREIELENENLCLRTKIAEVERIQQANMVSGQDQLNAMHALASRNFFNPAIIEPSAAPYPQSDKKMLHLG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1897 224 Coils Coil 121 163 - -
Bisa12g1897 224 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Bisa12g1897 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa12g1897 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa12g1897 224 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Bisa12g1897 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa12g1897 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa12g1897 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa12g1897 224 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa12g1897 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Bisa12g1897 224 Coils Coil 87 107 - -
Bisa12g1897 224 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bisa12g1897 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa12g1897 224 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bisa12g1897 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa12g1897 224 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1897 Bisa-ChrBisa12 43501023 43516294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1897 1 224 MADS-box Gene Family AT4G09960 74.026 1.23e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa12g1897 K-box 3.7e-27 No_clan