Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1872 ATGGACGCCCAGACCTGGCTCAGTGCGGCCCTCACCAACATCGCTACCTGCAAGAACGGAGCCGTTGATCTGAACCTCTCCTCCTCGCATTTCGCGGCGTCAAATTCTGGTAGCGTCTTCTTCAATGTCACGAAGATGATAAGCAACGGGTTAGCCGTGAACGCAGCATTTCTGAAACGAAATAGTTACATATCTGATAAGAATTACACGGAGAAATCCGAATCTGGATCTGGATCTGAATTTCCAAGGTGGTTTTCGAGGCGGGAGAGGAAGCTGGTGACGGTGTCGTCGGCAACGATAAAGGCGCATCTGGTGGTGGCGAAGGACGGGTCGGGGGATTTCAGGACGGTGCAGGGGGCTTTGAATGCGGCGGCGAAGAGGAGGACCAAGACGAGGTTTGTGATAAGGGTGAAGAGAGGGGTTTATAGAGAGAACATTGAGGTGGATAAGAGTAACGATAACATAATGCTGGTGGGTGAGGGGATGAGGTATACGATAATAACGAGTTCAAAGAGCGTTCAGGACGGTATTACCACCTATAGCTCTGCAACTGCTGGCATAGATGGTGTCCATTTCATTGCACGTGACATCGGCTTTCAAAACAGTGCGGGTGCTCGCAAGGGGCAGGCGGTGGCACTGCGATCAGCCTCAGACCTGTCGGTCTTTTACCGGTGTGCCATTACAGGATACCAAGACACCCTCATGGTTCACGCACAACGTCAATTTTACAAAGAGTGCTACATCTATGGCACTGTAGACTTCATCTTTGGCAATGCGGCAGTAGTTTTTCAGAACTGTATGATTTATGCAAGAAGGCCATTAGCTGGCCAAGCAAACATGATCACGGCCCAAGGTCGAGGCGACCCATACCAAAACACCGGCATCTCCATCCACAATTCCCAGATCCGTGCCGCGCCAGACCTCCTGCCTGTTATCGGCTCATTTCTCACTTACTTGGGCCGCCCATGGCAGCAGTACTCCAGGGTAGTCATCATCAAGTCCTACATAGACTCCTTGGTCACTCCACTGGGCTGGTCTCCATGGGGAAATTCTGATTTTGCTTTAACTACACTTTATTTTGGAGAATATGCTAATCTTGGACCTCGTTCATCAACAAGCACGAGGGTCAAATGGAAAGGGTTTCATGCCATAACCACCTCAACTGAGGCATCTAGCTTCACTGTGAATAGCCTCCTTGCTGGCACCACATGGTTGCCTTCAACTGGTGTGCCTTTCACTGCTGGATTATAG 1251 0.5036 MDAQTWLSAALTNIATCKNGAVDLNLSSSHFAASNSGSVFFNVTKMISNGLAVNAAFLKRNSYISDKNYTEKSESGSGSEFPRWFSRRERKLVTVSSATIKAHLVVAKDGSGDFRTVQGALNAAAKRRTKTRFVIRVKRGVYRENIEVDKSNDNIMLVGEGMRYTIITSSKSVQDGITTYSSATAGIDGVHFIARDIGFQNSAGARKGQAVALRSASDLSVFYRCAITGYQDTLMVHAQRQFYKECYIYGTVDFIFGNAAVVFQNCMIYARRPLAGQANMITAQGRGDPYQNTGISIHNSQIRAAPDLLPVIGSFLTYLGRPWQQYSRVVIIKSYIDSLVTPLGWSPWGNSDFALTTLYFGEYANLGPRSSTSTRVKWKGFHAITTSTEASSFTVNSLLAGTTWLPSTGVPFTAGL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1872 416 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 57 IPR035513 -
Bisa12g1872 416 Pfam Pectinesterase 104 401 IPR000070 GO:0030599|GO:0042545
Bisa12g1872 416 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Bisa12g1872 416 Gene3D - 96 416 IPR012334 -
Bisa12g1872 416 SUPERFAMILY Pectin lyase-like 98 415 IPR011050 -
Bisa12g1872 416 PANTHER PECTINESTERASE 2 406 - -
Bisa12g1872 416 ProSitePatterns Pectinesterase signature 1. 129 148 IPR018040 -
Bisa12g1872 416 FunFam Pectinesterase 97 416 - -
Bisa12g1872 416 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 57 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1872 Bisa-ChrBisa12 40876223 40878041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1872 1 416 Carbohydrate Esterase AT5G51500 60.859 0.0 517